Target intelligence / Profile preview

Cdc2-like kinase 1, 2, 3, and 4 (CLK1, CLK2, CLK3, CLK4)

Target
CLK1, CLK2, CLK3, CLK4
Molecular classification
Enzyme, Protein kinase, Dual-specificity kinase (can phosphorylate serine/threonine and tyrosine residues), Member of the CMGC kinase group (includes CDKs, MAPKs, GSKs, CDK-like kinases)
01

Overview

Cdc2-like kinases (CLK1, CLK2, CLK3, and CLK4) are a family of dual-specificity protein kinases characterized by the conserved LAMMER motif. Their primary function is the phosphorylation of serine/arginine-rich domains on splicing factors, regulating pre-mRNA alternative splicing in the nucleus. These kinases thereby influence the production of multiple mRNA isoforms from a single gene, impacting cell growth, survival, and differentiation. CLKs are evolutionarily conserved and found to be dysregulated in various cancers. Pharmacological inhibition of CLKs is being explored as a means of correcting mis-splicing in disease, but developing selective and safe drugs remains challenging due to the broad biological roles of these enzymes.

Other names
CLK kinasesLAMMER kinasesDual specificity protein kinase CLK1, CLK2, CLK3, CLK4Neuronal cdc2-like kinase (specifically for nCLK)
02

Mechanism of action

Drugs typically function as small-molecule inhibitors that bind to the ATP-binding site of CLKs, inhibiting kinase activity and thus altering SR protein phosphorylation and splicing regulation.

03

Biological functions

Regulation of pre-mRNA splicingPhosphorylation of serine/arginine-rich (SR) splicing factorsAlternative splicing and modulation of gene expressionCell growth, cell survival, and cellular localization of splicing machinery
04

Disease associations

Cancer (including colon, liver, prostate, kidney, stomach, head and neck, and more; overexpression and mechanistic involvement in tumor biology are reported)Other diseases associated with gene mis-splicing (exact spectrum incompletely defined, including some non-cancer disorders)
05

Safety considerations

Potential for broad effects on RNA splicing in normal cells, raising concerns for off-target toxicity, especially since splicing regulation is an essential process in most tissuesTherapeutic window and long-term effects of splicing modulators are not yet fully defined
06

Interacting drugs

TG003

3 more in the full profile.

07

Biomarkers

Phosphorylation status of SR proteins can be used as a functional readout of CLK activityOverexpression of CLK1 or PCMGC group kinases in tumor tissue may serve as a biomarker for certain cancers

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