Target intelligence / Profile preview

CRISPR-associated protein 9 (Cas9) (Cas9)

Target
Cas9
Molecular classification
Enzyme, Endonuclease, RNA-guided DNA endonuclease
01

Overview

CRISPR-associated protein 9 (Cas9) is a dual RNA-guided DNA endonuclease that serves as the effector protein in the Type II CRISPR-Cas bacterial adaptive immune system (UniProt: Q99ZW2). It functions by forming a ribonucleoprotein (RNP) complex with a guide RNA (gRNA) that directs the enzyme to a specific 20-nucleotide genomic sequence adjacent to a protospacer adjacent motif (PAM) (Jinek et al., 2012, Science). Upon binding, Cas9 undergoes a conformational change and utilizes its HNH and RuvC nuclease domains to induce a double-strand break (DSB) in the target DNA. In therapeutic applications, this mechanism is harnessed to modify the human genome by either disrupting a disease-causing gene through non-homologous end joining (NHEJ) or correcting a mutation via homology-directed repair (HDR) (Doudna & Charpentier, 2014, Science). The first FDA-approved therapy utilizing Cas9, exagamglogene autotemcel, targets the BCL11A enhancer to treat sickle cell disease and beta-thalassemia (FDA, 2023). Ongoing clinical development focuses on in vivo delivery for conditions like transthyretin amyloidosis and hereditary angioedema, though challenges remain regarding off-target effects and potential immune reactions to the bacterial protein (Gillmore et al., 2021, NEJM).

Other names
Csn1Cas9 nucleaseRNA-guided DNA endonuclease Cas9SpCas9CRISPR-associated endonuclease Cas9
02

Mechanism of action

RNA-guided site-specific DNA double-strand break induction followed by cellular DNA repair mechanisms, such as Non-Homologous End Joining (NHEJ) or Homology-Directed Repair (HDR), to achieve gene knockout, insertion, or correction.

03

Biological functions

Adaptive immunityDNA cleavageGenome editingGene regulation
04

Disease associations

Sickle cell diseaseBeta-thalassemiaTransthyretin amyloidosisHereditary angioedemaLeber congenital amaurosisCancerGenetic disorders
05

Safety considerations

Off-target DNA cleavageImmunogenicity (pre-existing anti-Cas9 antibodies)Chromosomal translocationsp53-mediated DNA damage responseGenotoxicityDelivery vehicle toxicity (e.g., LNP or AAV concerns)
06

Interacting drugs

Exagamglogene autotemcel

4 more in the full profile.

07

Biomarkers

Indel frequency (Next-Generation Sequencing)Fetal hemoglobin (HbF) levelsSerum transthyretin (TTR) levelsC1-esterase inhibitor levelsTarget DNA cleavage efficiency

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