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DNA (cytosine-5-)-methyltransferase 1, DNA (cytosine-5-)-methyltransferase 3 beta, and histone deacetylases (DNMT1/DNMT3B/HDACs)

Target
DNMT1/DNMT3B/HDACs
Molecular classification
Enzyme, Histone modification, Epigenetic regulator
01

Overview

DNA (cytosine-5-)-methyltransferase 1 (DNMT1), DNA (cytosine-5-)-methyltransferase 3 beta (DNMT3B), and histone deacetylases (HDACs) are a group of epigenetic enzymes that cooperatively regulate gene expression by modifying DNA and chromatin structure [1, 17]. DNMT1 is primarily responsible for maintaining DNA methylation patterns during replication, while DNMT3B facilitates de novo methylation; HDACs remove acetyl groups from histones, leading to a condensed, transcriptionally inactive chromatin state [9, 19, 23]. In many cancers, these enzymes are overexpressed or dysregulated, resulting in the silencing of tumor suppressor genes and the promotion of cancer stem cell survival [1, 11]. Therapeutic strategies targeting this axis involve combination treatments or dual-action inhibitors designed to reactivate silenced genes and induce a 'viral mimicry' response, where the reactivation of endogenous retroviruses triggers an immune-mediated antitumour effect [3, 5, 6]. This multi-target approach has shown significant potential in overcoming drug resistance and enhancing the efficacy of immune checkpoint blockades [5, 13, 20].

Other names
DNMT1DNMT3BHDACsDNA (cytosine-5-)-methyltransferase 1DNA (cytosine-5-)-methyltransferase 3 betaHistone deacetylase familyDNA methyltransferase 1DNA methyltransferase 3 beta
02

Mechanism of action

Simultaneous inhibition of DNA methyltransferases and histone deacetylases to reverse epigenetic silencing of tumor suppressor genes, induce viral mimicry through endogenous retrovirus reactivation, and enhance antitumour immunity [3, 5, 6, 15].

03

Biological functions

DNA methylationHistone deacetylationGene silencingChromatin remodelingCell cycle regulationApoptosisImmune response modulationMaintenance of stem cell self-renewal
04

Disease associations

CancerBreast cancerColorectal cancerOvarian cancerAcute myeloid leukemiaGliomaHematological malignancies
05

Safety considerations

Myelosuppression (neutropenia, thrombocytopenia) [8]Gastrointestinal toxicity (nausea, diarrhea) [13]FatigueCardiac toxicity (QT prolongation) [14]Infection risk [8]
06

Interacting drugs

Azacitidine

11 more in the full profile.

07

Biomarkers

DNA methylation status (e.g., hMLH1, MAGE-A1) [20]Histone acetylation levels [10]Endogenous retroviral (ERV) expression [5]Interferon-stimulated gene (ISG) expression [5]UCK1, DDIT3, and PMAIP1 status (for azacitidine) [2]Mcl-1, xCT, and Xist status (for HDAC inhibitors) [2]

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