Target intelligence / Profile preview

DNA-directed RNA polymerase subunit beta' (RpoC)

Target
RpoC
Molecular classification
Enzyme, Transferase, DNA-directed RNA polymerase
01

Overview

The Staphylococcus aureus RNA polymerase beta' subunit (RpoC) is a fundamental component of the bacterial transcription machinery, forming the catalytic core of the RNA polymerase (RNAP) enzyme alongside the alpha, beta, and omega subunits [7, 9]. It is primarily responsible for DNA binding and facilitating the elongation of the RNA chain during transcription [8, 11]. In S. aureus, RpoC is a critical therapeutic target for antibiotics such as fidaxomicin, which interacts with the 'switch' region at the interface of the beta and beta' subunits to inhibit transcription initiation [4, 9]. Mutations in the rpoC gene are clinically significant as they are frequently associated with the development of resistance to last-resort antibiotics, including vancomycin (contributing to the 'slow VISA' phenotype) and daptomycin [2, 14]. Because bacterial RNAP subunits are structurally distinct from eukaryotic RNA polymerases, RpoC serves as an important target for the development of selective antimicrobial agents with minimal host toxicity [4, 10].

Other names
DNA-directed RNA polymerase subunit beta primeRNA polymerase subunit beta'RpoCTranscriptase subunit beta'
02

Mechanism of action

Inhibition of DNA-directed RNA polymerase activity, blocking of transcription initiation by binding to the switch region, and steric hindrance of RNA chain elongation.

03

Biological functions

DNA-templated transcriptionRNA biosynthetic processDNA bindingMagnesium ion bindingZinc ion binding
04

Disease associations

Infection
05

Safety considerations

Rapid development of antibiotic resistanceCross-resistance with other RNA polymerase inhibitorsHepatotoxicity associated with certain inhibitorsDrug-drug interactions
06

Interacting drugs

Fidaxomicin

9 more in the full profile.

07

Biomarkers

rpoC gene mutations (e.g., R80S, P440L, N341D)Bacterial RNA expression levelsBacterial load

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