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DNA interstrand cross-link (induced by cyclophosphamide alkylation of guanine)

Molecular classification
Other (DNA modification/adduct; not a protein, enzyme, receptor, or transporter)
01

Overview

Cyclophosphamide is a DNA-alkylating chemotherapeutic agent that is metabolically activated to phosphoramide mustard, which forms covalent bonds (alkyl adducts) at the N-7 position of guanine bases in DNA[1][2][6]. The most cytotoxic lesions are interstrand DNA crosslinks, in which two guanine bases on opposite DNA strands are covalently linked, preventing the strands from separating for replication or transcription[1][5]. These crosslinks, if unrepaired, block cell division and lead to programmed cell death (apoptosis)[2][4]. Cyclophosphamide-induced DNA crosslinks are central to the drug's anti-cancer and immunosuppressive effects, but also underlie many of its toxicities in non-cancerous cells, contributing to risks such as myelosuppression and secondary malignancies[4][5]. This entry describes a drug-induced DNA modification/lesion (DNA interstrand cross-link) rather than a canonical molecular target such as a protein, enzyme, or receptor. While this lesion is central to the mechanism of action of cyclophosphamide, it is an *effect* of the drug's interaction with DNA, not the 'target' itself in a conventional sense. The direct molecular target for cyclophosphamide is the guanine base within genomic DNA. Therefore, according to target classification conventions, this entry is marked as 'is_incorrect: true' for a target database, as it represents a biomolecular event or drug effect rather than a discrete, regulatable molecular entity.

Other names
DNA cross-linkInterstrand DNA cross-linkDNA adduct (specifically cyclophosphamide-induced N-7 guanine crosslink)
02

Mechanism of action

Cyclophosphamide is metabolized in the liver to form phosphoramide mustard, which alkylates the N-7 position of guanine, resulting in intra- and interstrand DNA crosslinks. These covalent interstrand crosslinks inhibit DNA replication and transcription, leading to cell death if the lesion cannot be repaired. If cross-links cannot be repaired, p53 activation leads to cell cycle arrest and subsequent programmed cell death (apoptosis).

03

Biological functions

Cell death (via apoptosis, following DNA replication block)Cell cycle arrest
04

Disease associations

Cancer (as a chemotherapeutic effect)Autoimmune disease (cyclophosphamide is used for immunosuppression via DNA damage to lymphocytes)
05

Safety considerations

Off-target DNA damage in healthy cells, causing myelosuppression, immunosuppression, infertility, and increased risk for secondary malignancies (notably bladder cancer, leukemia, lymphoma)Hemorrhagic cystitis due to a toxic metabolite (acrolein)
06

Interacting drugs

Cyclophosphamide

3 more in the full profile.

07

Biomarkers

N-7-guanine DNA adducts/interstrand crosslinks

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