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DNA polymerase alpha and DNA polymerase epsilon are essential enzymes in the eukaryotic DNA replication machinery, responsible for synthesizing the lagging and leading strands, respectively [1, 2]. These enzymes are the primary therapeutic targets of clofarabine, a second-generation purine nucleoside analog used in the treatment of pediatric and adult leukemias [3, 7]. Clofarabine is converted into an active triphosphate form that competes with natural nucleotides for binding to these polymerases and is subsequently incorporated into the growing DNA chain [5, 8]. This incorporation causes premature chain termination and replication fork arrest, which triggers DNA damage signaling and programmed cell death [4, 10]. Because malignant cells in leukemia exhibit high rates of DNA replication, they are particularly sensitive to the inhibition of these polymerases [11, 12]. The therapeutic efficacy of targeting these enzymes is often enhanced by the simultaneous inhibition of ribonucleotide reductase, which depletes the competing natural nucleotide pools [6, 9].
Clofarabine is phosphorylated to its active triphosphate form, which inhibits DNA synthesis by competing with dATP for incorporation into DNA by DNA polymerase alpha and epsilon [1, 3]. Once incorporated into the nascent DNA strand, it acts as a chain terminator, leading to replication fork arrest, DNA strand breaks, and the induction of apoptosis [5, 8].
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