Target intelligence / Profile preview

Glycine dehydrogenase (decarboxylating), mitochondrial (GLDC)

Target
GLDC
Molecular classification
Enzyme, Mitochondrial protein, Oxidoreductase
01

Overview

Glycine dehydrogenase (decarboxylating), mitochondrial (GLDC), is a pyridoxal phosphate-dependent enzyme and a core component (P-protein) of the mitochondrial glycine cleavage system[1][2][4]. It catalyzes the first and rate-limiting step of glycine catabolism, binding glycine and facilitating its degradation with the release of CO₂, and transfer of the remaining methylamine group to the H-protein of the system[1][4]. This enzyme plays a critical role in amino acid metabolism, supplying one-carbon units to the folate pathway, which is essential for nucleotide synthesis and general cellular function[2][3]. Pathogenic variants in GLDC cause nonketotic hyperglycinemia (glycine encephalopathy), a severe metabolic brain disorder characterized by glycine accumulation and neurological deficits[2]. Recent research links GLDC to cancer biology, where its upregulation supports tumor growth, proliferation, and metabolism in several malignancies, including neuroblastoma and non-small cell lung cancer[3][5]. Mitochondrial, post-translational, and epigenetic regulation of GLDC are active areas of therapeutic interest. Key functions and disease links are well-documented; however, no drugs currently target GLDC specifically in approved clinical use. Its primary significance is as an essential enzyme of intermediary metabolism and as a pathogenic driver in inherited metabolic disease and cancer.

Other names
Glycine decarboxylaseGlycine cleavage system protein PGlycine decarboxylase P-proteinGlycine dehydrogenase (aminomethyl-transferring)Glycine dehydrogenase [decarboxylating], mitochondrialGlycine cleavage system P proteinGCSPGCEGCE1NKHHYGN1
02

Mechanism of action

Modulation of glycine cleavage system and glycine catabolism (for experimental therapies targeting glycine breakdown); Inhibition of GLDC activity (potential anti-cancer research area, often via indirect regulation, e.g., acetylation-mediated enzymatic suppression)[3]

03

Biological functions

Glycine catabolismAmino acid metabolismGeneration of one-carbon units (for folate and nucleotide metabolism)Regulation of pyrimidine synthesisProtein degradation regulation via post-translational modificationCellular energy metabolism
04

Disease associations

Neurodevelopmental disorders (notably nonketotic hyperglycinemia/glycine encephalopathy)Neural tube defectsCancer (including roles in tumorigenesis and cell proliferation in certain cancer types such as neuroblastoma and non-small cell lung cancer)
05

Safety considerations

Deficiency or loss-of-function mutations lead to toxic glycine accumulation (causing neurological and developmental defects, as in nonketotic hyperglycinemia)[2]Targeted inhibition could disrupt essential amino acid and folate metabolism, raising concerns for developmental, neurological, or systemic toxicity
06

Interacting drugs

None currently established as directly interacting drugs; conventional therapies for nonketotic hyperglycinemia include sodium benzoate and dextromethorphan (both more for downstream effect than direct GLDC targeting)[2].

1 more in the full profile.

07

Biomarkers

GLDC mutation status (for nonketotic hyperglycinemia diagnosis and possible carrier screening)GLDC expression level (prognostic in certain cancers, e.g., neuroblastoma)[3]

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