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Histone deacetylase (HDAC), class I, IIa, IIb, and IV (HDAC (for the family); individual isoforms abbreviated as HDAC1, HDAC2, ..., HDAC11, corresponding to specific genes)

Target
HDAC (for the family); individual isoforms abbreviated as HDAC1, HDAC2, ..., HDAC11, corresponding to specific genes
Molecular classification
Enzyme, Histone modification enzyme, Epigenetic regulator, Zinc-dependent hydrolase
01

Overview

Histone deacetylases (HDACs) are a family of enzymes—divided into multiple classes (I, IIa, IIb, IV) based on sequence homology and domain organization—that mediate the removal of acetyl groups from lysine residues on histone and non-histone proteins, leading to chromatin compaction and transcriptional repression. These enzymes are central regulators of gene expression by modulating chromatin structure and altering the interaction of histones and DNA. Beyond histone deacetylation, HDACs also target many non-histone proteins involved in processes such as cell cycle progression, apoptosis, and signal transduction. Dysregulation or aberrant function of HDACs is linked to several diseases, including cancer, neurodegeneration, and inflammatory conditions. Inhibitors of HDAC activity have been developed as therapeutics for various malignancies, exploiting their ability to re-activate silenced genes and trigger tumor cell death.

Other names
HDACsHistone deacetylase familyClass I HDACs: HDAC1, HDAC2, HDAC3, HDAC8Class IIa HDACs: HDAC4, HDAC5, HDAC7, HDAC9Class IIb HDACs: HDAC6, HDAC10Class IV HDAC: HDAC11
02

Mechanism of action

Inhibition of HDAC activity, leading to hyperacetylation of histones and non-histone proteins; Chromatin relaxation and reactivation of silenced genes; Induction of cell cycle arrest and apoptosis

03

Biological functions

Chromatin remodelingGene expression regulationEpigenetic silencingCell differentiationCell cycle regulationApoptosisSignal transductionCell proliferation
04

Disease associations

CancerNeurodegenerative diseaseInflammationCardiovascular diseaseMusculoskeletal diseasePsychiatric disorders
05

Safety considerations

Off-target effects (due to the highly conserved zinc-binding catalytic domain among metalloenzymes)Bone marrow suppressionGastrointestinal toxicityFatigueCardiac arrhythmias (with some inhibitors)Poor pharmacokinetic properties for some classes (e.g., hydroxamate-based inhibitors)
06

Interacting drugs

Vorinostat (SAHA)

7 more in the full profile.

07

Biomarkers

Acetyl-histone H3 levelsAcetyl-α-tubulin (for HDAC6)Changes in expression of HDAC-regulated genesHistone acetylation status (e.g., global H3/H4 acetylation)

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