Target intelligence / Profile preview

Histone deacetylase 1, Histone deacetylase 2, Histone deacetylase 3, and Histone deacetylase 6 (HDAC1/2/3/6)

Target
HDAC1/2/3/6
Molecular classification
Enzyme, Histone modification, Histone deacetylase
01

Overview

Histone deacetylase 1 (HDAC1), Histone deacetylase 2 (HDAC2), Histone deacetylase 3 (HDAC3), and Histone deacetylase 6 (HDAC6) are key enzymes involved in the epigenetic regulation of gene expression and the post-translational modification of non-histone proteins [4, 9, 14]. HDAC1, 2, and 3 are Class I HDACs primarily located in the nucleus, where they function as catalytic components of multi-protein co-repressor complexes to regulate chromatin structure, cell cycle progression, and DNA repair [4, 12, 14]. In contrast, HDAC6 is a Class IIb HDAC predominantly found in the cytoplasm, where it modulates the acetylation of substrates such as alpha-tubulin, Hsp90, and cortactin, thereby influencing intracellular transport, protein degradation, and cell motility [17, 18, 19]. Dysregulation of these isoforms is frequently observed in various malignancies, leading to the silencing of tumor suppressor genes and the promotion of cell survival and proliferation [6, 10, 20]. Consequently, this specific combination of HDACs is a major therapeutic target in oncology, with several approved drugs like vorinostat and belinostat acting as inhibitors to induce apoptosis and inhibit tumor growth [5, 13, 16]. Beyond cancer, these enzymes are also implicated in neurodegenerative diseases and inflammatory conditions, making them versatile targets for drug development [1, 7, 17].

Other names
Class I and IIb histone deacetylasesHDAC1/2/3/6Histone deacetylase 1/2/3/6HDAC1, HDAC2, HDAC3, and HDAC6
02

Mechanism of action

Inhibition of histone and non-histone protein deacetylation, leading to increased acetylation of histones (promoting open chromatin and gene transcription) and non-histone proteins (e.g., alpha-tubulin, p53, Hsp90), resulting in cell cycle arrest, apoptosis, and impaired protein degradation pathways [4, 6, 13, 19].

03

Biological functions

Gene expression regulationCell cycle regulationApoptosisDNA repairProtein homeostasisAutophagyCytoskeleton organizationIntracellular transport
04

Disease associations

CancerHematological malignancyNeurodegenerative diseaseInflammationFibrosis
05

Safety considerations

Myelosuppression (thrombocytopenia, neutropenia, anemia)Gastrointestinal toxicity (diarrhea, nausea, vomiting)FatigueCardiac toxicity (QTc prolongation, arrhythmias)
06

Interacting drugs

Vorinostat (SAHA)

6 more in the full profile.

07

Biomarkers

Acetylated histone H3Acetylated histone H4Acetylated alpha-tubulinp21 (WAF1/CIP1) expressionHR23B

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