Target intelligence / Profile preview

Human ribosomal RNA (rRNA) (rRNA)

Target
rRNA
Molecular classification
Non-coding RNA, Ribozyme, Ribonucleic acid
01

Overview

Human ribosomal RNA (rRNA) is the central component of the ribosome, serving as both a structural scaffold and the catalytic engine (ribozyme) for protein synthesis in all human cells (Montanaro et al., 2008). It is synthesized in the nucleolus, where RNA Polymerase I transcribes a 45S precursor that is processed into 18S, 5.8S, and 28S rRNAs, while RNA Polymerase III produces the 5S rRNA (Grummt, 2003). The 28S rRNA is particularly critical as it contains the peptidyl transferase center responsible for forming peptide bonds during translation (Endo & Tsurugi, 1987). In many cancers, rRNA synthesis is significantly upregulated to meet the high protein demand of rapidly dividing cells, making it a strategic target for anti-tumor therapies (Pelletier et al., 2018). Therapeutic agents like CX-5461 (Pidnarulex) act by inhibiting the transcription of rRNA, thereby inducing nucleolar stress and activating p53-mediated cell cycle arrest (Drygin et al., 2011). Additionally, human rRNA is the direct target of ribosome-inactivating proteins like ricin, which halts translation by depurinating a specific adenine residue in the 28S rRNA (Endo & Tsurugi, 1987).

Other names
Ribosomal ribonucleic acid18S ribosomal RNA28S ribosomal RNA5.8S ribosomal RNA5S ribosomal RNACytoplasmic rRNA
02

Mechanism of action

Inhibition of RNA Polymerase I-mediated transcription of ribosomal DNA into pre-rRNA; site-specific enzymatic depurination of the sarcin-ricin loop in the 28S rRNA subunit which prevents elongation factor binding.

03

Biological functions

Protein synthesis (Translation)Peptidyl transferase activityRibosome assemblyNucleolar stress sensing
04

Disease associations

CancerRibosomopathyViral infection
05

Safety considerations

Bone marrow suppression (neutropenia, anemia)Gastrointestinal toxicityPotential for systemic inhibition of protein synthesisOff-target effects on mitochondrial ribosomes
06

Interacting drugs

Pidnarulex (CX-5461)

4 more in the full profile.

07

Biomarkers

45S pre-rRNA expression levelsNucleolar size and morphologyAgNOR protein staining intensityp53 status

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