Target intelligence / Profile preview

Lysine (K)-specific demethylase 1B (KDM1B)

Target
KDM1B
Molecular classification
Enzyme (specifically: histone demethylase), Chromatin-modifying enzyme, Epigenetic regulator, Zinc finger protein, Flavin-dependent oxidase
01

Overview

KDM1B, known as lysine (K)-specific demethylase 1B, is a flavin-dependent histone demethylase enzyme that catalyzes the removal of methyl groups from mono- and di-methylated lysine 4 on histone H3 (H3K4me1/2), marks typically associated with active transcription. This activity is crucial for epigenetic regulation of gene expression and the establishment of maternal DNA methylation imprints during oogenesis, which are necessary for proper development. KDM1B contains zinc finger motifs, a SWIRM domain, and shares structural similarity with other chromatin-remodeling enzymes. In addition to demethylase-dependent roles, KDM1B can mediate transcriptional repression independently of demethylase activity when tethered to DNA. Disruption of KDM1B function leads to defective imprinting, abnormal gene silencing or activation, developmental disorders, and early embryonic lethality. It is considered a therapeutic and research target in diseases involving epigenetic dysregulation, such as cancer and imprinting disorders.

Other names
LSD2AOF1BA204B7.3DJ298J15.2C6ORF193
02

Mechanism of action

Inhibition of histone demethylase activity, preventing removal of methyl groups from H3K4me1/2, leading to altered gene expression and chromatin state. Indirect modulation of DNA methylation and imprinting through altered histone marks. Potential induction of cell differentiation and apoptosis in cancer cells as a result of epigenetic modulation.

03

Biological functions

Epigenetic gene regulationHistone modification (demethylation of H3K4me1/2)Chromatin remodelingEstablishment of maternal genomic imprints during oogenesisTranscriptional repression/activationRegulation of DNA methylationCell proliferation, differentiation, and stemnessRegulating cell motility, angiogenesis, and senescence
04

Disease associations

Cancer (including cancer progression, chemoresistance, metastasis, epithelial–mesenchymal transition)Bainbridge-Ropers syndromeMyelodysplastic syndromeEmbryonic lethality due to failure of genomic imprintingNeurodevelopmental disorders (imprinting defects affect development)
05

Safety considerations

Disruption of KDM1B may cause embryonic lethality and genomic imprinting defects, leading to severe developmental syndromesTargeting KDM1B may impact normal epigenetic regulation and tissue developmentOff-target effects and overlap with LSD1/KDM1A may result in broader chromatin and gene expression changes, contributing to toxicity or unwanted differentiation
06

Interacting drugs

Investigational demethylase inhibitors (targeting KDM1B)

1 more in the full profile.

07

Biomarkers

Aberrant expression of KDM1B (in tumors and imprinted gene disorders)Imprinting defectsCancer progressionDevelopmental disordersEpigenetically dysregulated tumors (for patient selection)

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