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Nipped-B-like protein mRNA 3' untranslated region (NIPBL mRNA 3'UTR) (NIPBL mRNA 3'UTR)

Target
NIPBL mRNA 3'UTR
Molecular classification
RNA, Untranslated region, Regulatory RNA element
01

Overview

The NIPBL mRNA 3' untranslated region (3'UTR) is a critical regulatory segment of the messenger RNA encoding the Nipped-B-like protein (NIPBL). NIPBL is a key factor required for the loading of the cohesin complex onto chromatin, which is essential for sister chromatid cohesion, DNA repair, and transcriptional regulation (UniProt Q6KC79). Mutations in one allele of the NIPBL gene lead to haploinsufficiency, which is the primary cause of Cornelia de Lange Syndrome (CdLS), a developmental disorder characterized by intellectual disability, growth retardation, and limb deformities (PubMed: 15122254). The 3'UTR of NIPBL contains multiple binding sites for microRNAs (miRNAs), such as the miR-17~92 cluster, which normally repress its expression. By targeting these specific sequences within the 3'UTR using antisense oligonucleotides (ASOs), researchers aim to block miRNA-mediated repression and stabilize the mRNA, thereby increasing the production of NIPBL protein from the remaining functional allele. This therapeutic approach seeks to restore NIPBL levels to a physiological range and rescue the cellular and developmental defects associated with CdLS (PubMed: 31511515).

Other names
NIPBL 3' untranslated regionDelangin mRNA 3'UTRCDLS1 mRNA 3'UTRNipped-B-like protein 3'UTR
02

Mechanism of action

Antisense-mediated blockade of microRNA binding sites to increase protein translation and mRNA stability

03

Biological functions

Regulation of mRNA stabilityRegulation of translationPost-transcriptional gene regulationCohesin loading (indirectly via encoded protein)
04

Disease associations

Cornelia de Lange Syndrome
05

Safety considerations

Off-target RNA bindingSystemic delivery challengesPotential for NIPBL overexpression toxicityImmunogenicity of oligonucleotide backbone
06

Interacting drugs

Antisense oligonucleotides (ASOs)
07

Biomarkers

NIPBL mRNA levelsNIPBL protein levelsCohesin complex occupancy on chromatin

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