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Papain-like protease, SARS-CoV-2 (PLpro)

Target
PLpro
Molecular classification
Enzyme, Viral protease, Cysteine protease, Deubiquitinating enzyme (DUB), DeISGylating enzyme, Peptidase (Clan CA, family C16)
01

Overview

Papain-like protease, SARS-CoV-2 (PLpro) is a cysteine protease domain within non-structural protein 3 (Nsp3) of SARS-CoV-2, essential for viral replication due to its proteolytic processing of the viral polyproteins pp1a and pp1ab, releasing non-structural proteins required for assembly of the viral replicase-transcriptase complex[1][4][5]. PLpro has a canonical architecture reminiscent of deubiquitinases, with thumb, palm, and fingers domains, and an active site comprising a Cys-His-Asp catalytic triad[2][3][4]. Beyond its role in viral peptide cleavage, PLpro exerts deubiquitinating and deISGylating activities, removing ubiquitin and ISG15 modifications from host proteins, which allows the virus to antagonize the host innate immune response[3][4][5]. Due to its critical, multitargeted functions, PLpro is considered a prime therapeutic target for antiviral drug development, and several protease inhibitors, including GRL-0617 and related compounds, have shown the ability to inhibit its enzymatic activity and suppress SARS-CoV-2 replication in vitro[1][5].

Other names
SARS-CoV-2 PLproPL^proSARS-CoV-2 papain-like proteaseCoronavirus papain-like proteaseNsp3 papain-like protease domain
02

Mechanism of action

Inhibition of the proteolytic (peptidase) activity to block processing of viral polyproteins; Allosteric inhibition by preventing substrate or cofactor binding; Disruption of deubiquitination/deISGylation to restore host innate immunity

03

Biological functions

Cleavage of viral polyproteins (pp1a, pp1ab) to generate non-structural proteins essential for viral replicationDeubiquitination of host proteins (removal of ubiquitin)DeISGylation of host proteins (removal of ISG15 posttranslational modification)Modulation and evasion of host innate immune responses
04

Disease associations

Infection (key role in SARS-CoV-2 infection and COVID-19 pathogenesis)
05

Safety considerations

Host off-target effects due to structural similarity with host deubiquitinasesPotential effects on host immune pathway regulation and host protein turnover
06

Interacting drugs

GRL-0617

2 more in the full profile.

07

Biomarkers

Viral RNA load (as a marker of viral replication)Cleavage fragments of viral polyprotein substratesUbiquitinated/ISGylated host proteins (for research/experimental biomarker use)

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