Target intelligence / Profile preview

Single-stranded DNA-binding protein (SSB) (SSB)

Target
SSB
Molecular classification
DNA-binding protein, Replication factor, Molecular chaperone, Other
01

Overview

Single-stranded DNA-binding protein (SSB), known as Replication Protein A (RPA) in eukaryotes, is a critical factor in nearly all aspects of DNA metabolism. Its primary role is to bind and stabilize single-stranded DNA (ssDNA) intermediates that form during replication, repair, and recombination, preventing them from forming secondary structures or being degraded by nucleases [1][2]. In humans, the RPA heterotrimer (comprising RPA1, RPA2, and RPA3) coordinates the recruitment of various enzymes to sites of DNA damage, acting as a central hub for the DNA damage response (DDR) [3]. Because cancer cells often exhibit high levels of replicative stress and depend on robust DDR pathways for survival, RPA has emerged as a promising therapeutic target for sensitizing tumors to DNA-damaging agents [4]. Small molecule inhibitors, such as TDRL-505, are designed to block the interaction between RPA and ssDNA or its protein partners to induce synthetic lethality in repair-deficient cancers [5]. Additionally, bacterial SSB proteins are structurally distinct from human counterparts, making them viable targets for the development of novel antimicrobial agents [6].

Other names
Replication protein ARPASingle-stranded DNA-binding protein 1SSBP1Mitochondrial single-stranded DNA-binding proteinmtSSBReplication factor ARFA
02

Mechanism of action

Inhibition of single-stranded DNA binding and disruption of protein-protein interactions within the DNA damage response machinery.

03

Biological functions

DNA replicationDNA repairDNA recombinationStabilization of single-stranded DNAPrevention of DNA hairpinsDNA damage responseTelomere maintenance
04

Disease associations

CancerMitochondrial DNA depletion syndromeInfectionGenetic instabilityBloom syndromeWerner syndrome
05

Safety considerations

Systemic toxicity due to essential role in normal cell replicationPotential for off-target effects on mitochondrial DNA maintenanceImpairment of global genome stability in healthy tissues
06

Interacting drugs

TDRL-505

4 more in the full profile.

07

Biomarkers

RPA2 phosphorylation (pS4/S8)RPA2 phosphorylation (pS33)RPA1 expression levelsSSBP1 protein levels

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