Target intelligence / Profile preview

23S ribosomal RNA in 50S ribosomal subunit (23S rRNA)

Target
23S rRNA
Molecular classification
Other (functional ribonucleic acid, catalytic RNA), Component of ribosome (structural, not a classic protein target)
01

Overview

The **23S ribosomal RNA in the 50S ribosomal subunit** is a large, highly conserved ribonucleic acid molecule (~2,900 nucleotides in E. coli) that forms the core of the bacterial large ribosomal subunit (50S)[3]. It is the principal component of the ribosomal *peptidyl transferase center* (PTC), which catalyzes peptide bond formation during translation[2][3]. The 23S rRNA is arranged in six structural domains, interacts with both ribosomal proteins and tRNAs, and is critical for ribosome assembly and function[1][4]. Multiple classes of clinically important antibiotics exert their effects by binding to specific sites on the 23S rRNA, inhibiting protein synthesis; mutations or chemical modifications (e.g., methylation at specific nucleotides like U2552) can confer resistance and are important clinical biomarkers[3][5]. While not a receptor or enzyme in the conventional drug-target sense, the 23S rRNA is a validated and essential target for numerous antibiotics and is central to the biology of bacterial infection[3].

Other names
23S rRNA23S large subunit ribosomal RNA23S rDNA (for gene)
02

Mechanism of action

Inhibition of peptidyl transferase activity; Blockage of the peptide exit tunnel; Disruption of tRNA positioning at the A or P site; Allosteric modulation of ribosome conformation

03

Biological functions

Peptidyl transferase activity (catalysis of peptide bond formation)Ribosome assemblyProtein synthesis (translation)
04

Disease associations

Infection (bacterial ribosomes are a major target of antibiotics)Other (antibiotic resistance via rRNA mutation)
05

Safety considerations

Antibiotic toxicity (off-target effects in mitochondria, whose ribosomes resemble bacterial ribosomes)Development of antibiotic resistance via mutations or methylations in 23S rRNANarrow therapeutic index for some ribosome-targeting antibiotics
06

Interacting drugs

Chloramphenicol

6 more in the full profile.

07

Biomarkers

Mutations in 23S rRNA conferring antibiotic resistance (e.g., A2058G in macrolide resistance)

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