Target intelligence / Profile preview

23S ribosomal RNA of large ribosomal subunit (23S rRNA)

Target
23S rRNA
Molecular classification
Other, Ribosomal RNA
01

Overview

The 23S ribosomal RNA (23S rRNA) is a major structural and functional component of the large (50S) subunit of bacterial and archaeal ribosomes. It is approximately 2,904 nucleotides long in *E. coli* and forms the core of the 50S subunit, together with various ribosomal proteins and 5S rRNA[7][1][5]. The 23S rRNA is crucial for the ribosome’s peptidyl transferase activity, which catalyzes peptide bond formation during protein synthesis in all living cells[7]. Domain V of 23S rRNA forms the peptidyl transferase center (PTC), the primary target for many clinically important antibiotics, such as macrolides and chloramphenicol, which act by inhibiting protein synthesis[7]. Mutations in 23S rRNA domains are well-known mechanisms for the development of resistance to these antibiotics[7]. The structure and interactions of 23S rRNA are also essential for ribosomal assembly, stability, and function, including tRNA binding and coordination of trans-acting protein factors needed for ribosome biogenesis[1][6][4]. It plays a vital role in bacterial viability and is a validated therapeutic target for antibacterial drug development[7].

Other names
23S RNA23S ribosomal ribonucleic acid23S rRNA of 50S subunit
02

Mechanism of action

Inhibition of peptide bond formation (peptidyl transferase inhibition), Blocking of tRNA binding/translocation, Inhibition of ribosomal function

03

Biological functions

Protein synthesisPeptidyl transferase activitytRNA bindingRibosome assembly
04

Disease associations

InfectionAntibiotic resistanceOther
05

Safety considerations

Development of antibiotic resistance mutationsOff-target effects of antibioticsCellular toxicity in prokaryotic-mitochondrial similarity
06

Interacting drugs

Chloramphenicol

6 more in the full profile.

07

Biomarkers

Mutations in 23S rRNA (e.g., A2058G, A2059G in E. coli numbering) used as biomarkers for antibiotic resistance in pathogens

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