Target intelligence / Profile preview

23S ribosomal RNA of the 50S bacterial ribosome subunit (23S rRNA)

Target
23S rRNA
Molecular classification
Ribosomal RNA, Catalytic RNA (ribozyme), RNA component of large ribosomal subunit, Other
01

Overview

23S ribosomal RNA is a large RNA molecule, approximately 2,904 nucleotides in *Escherichia coli*, forming the catalytic core (peptidyl transferase center) of the 50S subunit of the bacterial ribosome[1][2]. It is essential for protein synthesis, facilitating peptide bond formation and ensuring proper positioning of tRNAs during translation[1][9][3]. The 23S rRNA is organized into six secondary structural domains, serving as the primary site for the binding of many clinically important antibiotics that inhibit bacterial translation[1]. Mutations or chemical modifications in specific nucleotides of 23S rRNA can result in antibiotic resistance and affect bacterial fitness[1][7]. The eukaryotic homolog is the 28S rRNA found in the 60S ribosomal subunit[1].

Other names
23S rRNA23S RNAlarge subunit ribosomal RNALSU rRNApeptidyl transferase center RNA
02

Mechanism of action

Inhibition of peptide bond formation by binding to the peptidyl transferase center Prevention of tRNA binding or proper positioning Inhibition of ribosomal translocation or elongation during translation Induction of conformational changes that hinder ribosomal function

03

Biological functions

Peptidyl transferase activity (catalysis of peptide bond formation during translation)tRNA substrate positioning at the ribosome active siteRibosome assembly and structural integrityProtein synthesis
04

Disease associations

Infection (as an antibiotic target in bacteria)Other
05

Safety considerations

Selectivity: Challenges differentiating bacterial from mitochondrial ribosomes in humans, leading to potential off-target effectsDevelopment of antibiotic resistance via mutations or methylation in 23S rRNAPossible cross-resistance to multiple antibiotics targeting the same RNA regions
06

Interacting drugs

Chloramphenicol

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