Target intelligence / Profile preview

Alpha-ketoglutarate-dependent dioxygenase ALKBH3 (ALKBH3)

Target
ALKBH3
Molecular classification
Enzyme (specifically, Fe(II)/alpha-ketoglutarate-dependent dioxygenase), DNA repair enzyme, RNA demethylase
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Overview

Alpha-ketoglutarate-dependent dioxygenase ALKBH3 (ALKBH3) is an iron- and alpha-ketoglutarate-dependent dioxygenase that functions as a demethylase for both DNA and RNA. It specifically removes methyl groups from 1-methyladenosine (m^1A) and 3-methylcytosine (m^3C) in tRNA and single-stranded DNA, helping to repair alkylation damage and regulate epitranscriptomic marks. ALKBH3 is preferentially expressed in various cancers—where it promotes cell proliferation, migration, invasion, and protein synthesis partly by generating tRNA-derived small RNAs after tRNA demethylation. Mechanistically, ALKBH3 supports ribosome assembly and helps cancer cells prevent apoptosis. It also regulates the ciliary cycle by controlling the m^1A modification status of Aurora A kinase mRNA. Therapeutically, ALKBH3 represents an emerging target for novel anticancer strategies, with research focused on small molecule inhibitors and potential biomarker applications for aggressive tumor identification

Other names
AlkB homolog 3AlkB family member 3ABH3Alpha-ketoglutarate-dependent dioxygenase ALKBH3
02

Mechanism of action

Inhibition of ALKBH3 leads to increased methylation of DNA/RNA, impairs DNA/RNA repair, decreases synthesis of proteins crucial for cancer cell survival and proliferation, and may sensitize cells to chemotherapeutics

03

Biological functions

DNA repairRNA demethylation (including tRNA/mRNA modification)Regulation of protein synthesisCell proliferationPrevention of apoptosisRegulation of cilia disassemblyEpitranscriptomic regulation
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Disease associations

Cancer (promotes tumor cell proliferation, migration, invasion)Possibly other diseases involving aberrant DNA/RNA methylation, though predominant evidence is in cancer
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Safety considerations

Targeting ALKBH3 could affect normal proliferating cells, as it is involved in DNA/RNA repair and protein synthesis.Possible off-target effects on RNA metabolism and global translation due to ALKBH3's broad substrate range.Potential impact on stem/progenitor cells or tissues with high turnover due to effects on cell growth and survival
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Interacting drugs

There are currently scarce or no clinically approved drugs with direct ALKBH3 specificity; however, small molecule inhibitors and chemical probes for research purposes are emerging, aimed at modulating its demethylase activity
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Biomarkers

ALKBH3 expression is a potential biomarker for certain cancers (e.g., prostate, pancreatic), as higher ALKBH3 expression correlates with tumorigenic and aggressive phenotypes

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