Target intelligence / Profile preview

Alternate isoform expression

Molecular classification
Post-transcriptional modification, Gene expression regulation, Other
01

Overview

Alternate isoform expression is a fundamental biological process, primarily mediated by alternative mRNA splicing, which allows a single gene to produce multiple distinct protein isoforms (National Human Genome Research Institute, 2023). This mechanism is a key driver of proteomic diversity and is essential for normal cellular function and development; however, its dysregulation is a hallmark of various pathologies, including cancer, where aberrant isoforms can drive oncogenesis and therapeutic resistance (Nature Reviews Cancer, 2013). While 'Alternate Isoform Expression' itself is a biological phenomenon rather than a discrete molecular target like a receptor or enzyme, it represents a critical therapeutic focus. Current pharmacological strategies involve the use of antisense oligonucleotides (ASOs) like Nusinersen or small molecules like Risdiplam to correct splicing defects or modulate the ratio of specific isoforms to treat genetic disorders such as spinal muscular atrophy (Nature Reviews Drug Discovery, 2021). Because this term describes a physiological process or outcome, it is often categorized as a biomarker or a therapeutic mechanism rather than a specific protein target.

Other names
Alternative mRNA splicingDifferential isoform usageSplice variant expressionAlternative splicingIsoform switching
02

Mechanism of action

Modulation of pre-mRNA splicing using antisense oligonucleotides (ASOs) or small molecule splice-modifiers to induce exon skipping, exon inclusion, or to inhibit the splicing machinery (e.g., spliceosome inhibitors).

03

Biological functions

Protein diversity generationRegulation of gene expressionTissue-specific protein synthesisSignal transduction
04

Disease associations

CancerSpinal muscular atrophyDuchenne muscular dystrophyNeurodegenerative diseaseRare disease
05

Safety considerations

Off-target splicing effects in non-target tissuesImmunogenicity and renal toxicity of antisense oligonucleotidesSystemic toxicity associated with general spliceosome inhibitionNervous system sensitivity to splicing alterations
06

Interacting drugs

Nusinersen

8 more in the full profile.

07

Biomarkers

Androgen receptor splice variant 7 (AR-V7)CD44 variant 6 (CD44v6)HER2 delta 16PKM2/PKM1 ratioEstrogen receptor alpha variant 36 (ER-alpha36)

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