AT-rich interactive domain-containing protein 1A (ARID1A (also known as BAF250a))
Target
ARID1A (also known as BAF250a)
Molecular classification
Transcription factor co-regulator/chromatin remodeler (SWI/SNF complex subunit), Histone/chromatin modification (ATP-dependent chromatin remodeling complex component), Other: DNA-binding protein with an ARID/BRIGHT domain
01
Overview
AT-rich interactive domain-containing protein 1A (ARID1A, BAF250a) is a large, noncatalytic DNA-binding subunit of the ATP-dependent SWI/SNF (BAF) chromatin-remodeling complex that confers target specificity and regulates transcription by altering chromatin structure; it contains an ARID DNA-binding domain that generally binds DNA without strict sequence specificity, large intrinsically disordered regions mediating multiple protein interactions, and can co-regulate steroid receptor–dependent transcription; ARID1A functions as a tumor suppressor and is among the most frequently mutated SWI/SNF components across cancers, with inactivating mutations leading to loss of nuclear protein; it also participates in DNA damage response by being recruited to double-strand breaks through ATR, facilitating end resection and ATR–Chk1 signaling, creating therapeutic vulnerabilities such as synthetic lethality to ATR inhibition
Other names
ARID1ABAF250aSWI1 homologAT-rich interaction domain 1Ap270/ARID domain protein
02
Mechanism of action
Synthetic lethality of ATR inhibition in ARID1A-deficient tumors: ATR inhibitor blocks decatenation checkpoint and ATR–Chk1 signaling, leading to mitotic catastrophe in cells reliant on ATR due to ARID1A loss; Targeting hyperactivated PI3K/AKT signaling consequent to ARID1A loss (therapeutic rationale from ARID1A’s repression of PIK3CA/PDK1)
03
Biological functions
Chromatin remodeling and regulation of gene transcription via SWI/SNF complexDNA binding through the ARID domain (generally sequence non-specific in ARID1A)Tumor suppressor function; repression of oncogenic pathways (e.g., PI3K/AKT via PIK3CA and PDK1 promoter repression)DNA damage response and homologous recombination support; recruitment to double-strand breaks via ATR and facilitation of end resection and ATR–Chk1 signalingRegulation of steroid receptor–dependent transcription and interactions with transcription factors (e.g., glucocorticoid receptor, beta-catenin)
04
Disease associations
Cancer: frequently mutated tumor suppressor across multiple cancers, including ovarian clear cell, endometrial, gastric, bladder, colorectal, liver, lymphoma; associated with loss of nuclear expression and oncogenesisCancer progression and therapy resistance: reduced ARID1A expression linked to metastasis in breast cancer and resistance to trastuzumab and mTOR inhibitors
05
Safety considerations
Direct pharmacologic restoration of a large scaffolding chromatin protein is challenging; therapeutic strategies often rely on synthetic lethality, which may have class-specific toxicities (e.g., ATR inhibitor myelosuppression), and potential resistance mechanisms are a concern
06
Interacting drugs
ATR inhibitors (synthetic lethality in ARID1A-deficient models; examples class-wide rather than specific brand names referenced in-source)
1 more in the full profile.
07
Biomarkers
Loss-of-function mutations in ARID1A (frameshift/truncation) and loss of nuclear ARID1A protein by IHC as a surrogate for mutation statusARID1A deficiency as a predictive biomarker for sensitivity to ATR inhibitors (synthetic lethality)ARID1A promoter hypermethylation associated with loss of expression
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