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Brain-derived neurotrophic factor antisense RNA (BDNF-AS)

Target
BDNF-AS
Molecular classification
Long non-coding RNA (lncRNA), Natural antisense transcript (NAT), Other (non-protein-coding RNA)
01

Overview

Brain-derived neurotrophic factor antisense RNA (BDNF-AS) is a long non-coding RNA transcribed from the opposite strand of the BDNF gene, primarily expressed in the central nervous system[1]. It functions as a natural antisense transcript, forming double-stranded RNA duplexes with BDNF mRNA, and acts as a key negative regulator of BDNF transcription through recruitment of chromatin-modifying enzymes such as EZH2, which promotes repressive histone methylation (H3K27me3) at the BDNF promoter[2][3][4]. Elevated levels of BDNF-AS suppress BDNF expression, increase neuronal apoptosis, and decrease cell viability, while inhibition leads to increased BDNF levels, enhanced neuronal differentiation, and survival. BDNF-AS is implicated in neurodegenerative diseases such as Alzheimer’s and Huntington’s disease, as well as psychiatric disorders related to synaptic plasticity[4]. The main therapeutic strategy under investigation involves antisense oligonucleotides directed at BDNF-AS to upregulate BDNF, representing a promising avenue for neuroprotection and disease modification, albeit with notable challenges related to specificity and epigenetic safety[2][4].

Other names
BT2ABT2BBT2CBT2DNCRNA00049BDNF-AS1BDNFASnon-protein coding RNA 49BDNF antisense RNA 1 (non-protein coding)ANTI-BDNFBDNFOSbrain-derived neurotrophic factor opposite strandBDNF antisense RNA (non-protein coding)BDNF opposite strand (non-protein coding)
02

Mechanism of action

ASOs/AntagoNATs bind BDNF-AS RNA, promoting its degradation or blocking its function. Knockdown/inhibition of BDNF-AS increases BDNF mRNA and protein levels, thereby enhancing neuronal differentiation and survival

03

Biological functions

Epigenetic regulation of gene expressionSuppression of BDNF transcription and mRNA levelsRegulation of neuronal differentiation and neurogenesisModulation of neuronal survival and apoptosis
04

Disease associations

Neurodegenerative diseasePsychiatric diseaseOther (potential in neurodevelopmental and synaptic disorders, given regulatory role over BDNF)Injury response in the nervous system
05

Safety considerations

Off-target effects of ASOsEpigenetic modulation risk: targeting BDNF-AS may also affect broader chromatin architecture, with unknown systemic consequencesPotential for affecting other overlapping sense/antisense gene pairs given genomic locus complexity
06

Interacting drugs

Antisense oligonucleotides (ASOs) specifically designed to inhibit BDNF-AS (AntagoNAT-class molecules; experimental)

1 more in the full profile.

07

Biomarkers

BDNF-AS expression levelBDNF mRNA/protein levelH3K27me3 chromatin mark occupancy at BDNF promoter (proxy for BDNF-AS activity)

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