Target intelligence / Profile preview

Chloride voltage-gated channel 3 (CLCN3) (CLCN3)

Target
CLCN3
Molecular classification
Ion channel, Transporter, Chloride channel family (ClC family), 2Cl-/H+ exchanger
01

Overview

Chloride voltage-gated channel 3 (CLCN3), also known as ClC-3, is a member of the voltage-gated chloride channel family that primarily functions as an electrogenic 2Cl-/H+ exchanger [UniProt, NIH]. It is predominantly localized in the membranes of intracellular organelles such as endosomes, lysosomes, and synaptic vesicles, where it plays a critical role in luminal acidification and ion homeostasis [UniProt, Wikipedia]. CLCN3 is also found on the plasma membrane, contributing to volume-regulated chloride currents (VRAC/VRCC) that are essential for cell volume regulation, proliferation, and migration [NIH, Frontiers]. In pathology, CLCN3 is frequently overexpressed in various cancers, including glioma and ovarian cancer, where it promotes tumor invasion, metastasis, and resistance to chemotherapy [NIH, Oncotarget]. Conversely, loss-of-function mutations in humans are linked to neurodevelopmental disorders characterized by hypotonia and brain abnormalities, while Clcn3-deficient mice exhibit severe hippocampal and retinal degeneration [NIH, UniProt]. Although specific clinical drugs targeting CLCN3 are currently lacking, non-specific inhibitors like DIDS and tamoxifen, as well as the peptide chlorotoxin, have been used in research to modulate its activity [NIH, MDPI]. Targeting CLCN3 represents a promising therapeutic strategy for treating aggressive cancers and atherosclerosis, though safety concerns regarding neurotoxicity must be carefully managed [NIH].

Other names
ClC-3CLC3Chloride channel protein 3H(+)/Cl(-) exchange transporter 3Chloride transporter ClC-3
02

Mechanism of action

Inhibition of chloride/proton exchange and volume-regulated chloride currents to suppress cell proliferation, migration, and invasion in cancer and atherosclerosis; or activation to induce apoptosis and sensitize cells to chemotherapy [NIH, MDPI].

03

Biological functions

Ion transportOrganelle acidificationCell volume regulationCell cycle regulationCell proliferationCell migration and invasion
04

Disease associations

Cancer (e.g., Glioma, Ovarian cancer, Cervical cancer) [NIH, Oncotarget]Neurodevelopmental disorder with hypotonia and brain abnormalities (NEDHYBA) [UniProt, NIH]Atherosclerosis [NIH]Ischemia/reperfusion injury [Atlas of Genetics and Cytogenetics in Oncology and Haematology]
05

Safety considerations

Neurodegeneration (hippocampal and retinal) [NIH]Neurodevelopmental delay and brain structural abnormalities [NIH]Impaired organelle acidification [UniProt]
06

Interacting drugs

Chlorotoxin [NIH]

5 more in the full profile.

07

Biomarkers

CLCN3 mRNA expression levels [NIH]CLCN3 protein expression levels [NIH]CLCN3-mediated chloride current activity [NIH]

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