Target intelligence / Profile preview

Histone deacetylase 2 and Histone deacetylase 3 (HDAC2 and HDAC3)

Target
HDAC2 and HDAC3
Molecular classification
Enzyme, Histone modification enzyme, Transcriptional corepressor, Epigenetic regulator
01

Overview

Histone deacetylase 2 and Histone deacetylase 3 are members of the class I family of zinc-dependent histone deacetylases. These enzymes catalyze the removal of acetyl groups from ε-N-acetyl lysine residues on both histones and non-histone proteins. By removing these acetyl groups, they promote chromatin condensation and transcriptional repression. Beyond their role in gene silencing through chromatin remodeling, they also regulate numerous cellular processes by modifying non-histone substrates involved in signal transduction pathways. Dysregulation or overexpression is associated with several human diseases including cancer and neurodegeneration. They are validated therapeutic targets for small-molecule inhibitors used primarily in oncology.

Other names
HDAC2HDAC3Class I histone deacetylaseRpd3-like protein (homologous to yeast Rpd3)
02

Mechanism of action

Drugs targeting these molecules typically act as competitive inhibitors of the zinc-dependent catalytic site, blocking the removal of acetyl groups from lysine residues on histones/non-histones. This leads to increased acetylation, relaxed chromatin structure, reactivation of silenced genes (including tumor suppressors), cell cycle arrest, differentiation or apoptosis in cancer cells.

03

Biological functions

Regulation of gene expression via chromatin remodelingDeacetylation of lysine residues on histones and non-histone proteinsCell cycle regulationSignal transduction (e.g., Notch signaling pathway)Cell growth and death
04

Disease associations

Cancer (upregulated activity in various cancers)Neurodegenerative disease (implicated in diseases such as schizophrenia, Alzheimer’s disease)Other roles in chronic myeloid leukemia, inflammation, cardiovascular disease have been reported but are less well established for these specific isoforms
05

Safety considerations

Notable safety concerns with inhibition include hematologic toxicity (thrombocytopenia, neutropenia)cardiac toxicity (QT prolongation)gastrointestinal side effectsfatigue.Off-target effects due to broad inhibition across multiple isoforms can lead to unwanted epigenetic changes affecting normal cells.Selectivity remains a therapeutic challenge.
06

Interacting drugs

Vorinostat (SAHA)

5 more in the full profile.

07

Biomarkers

No universally accepted biomarkers specific for patient selection for HDAC inhibitor therapy targeting only HDAC2/HDAC3; however,Global levels of histone acetylation may be used as a pharmacodynamic biomarker.Expression levels or mutations in certain cancers may serve as exploratory biomarkers.

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