Target intelligence / Profile preview

Cyclin-dependent kinase 13 (CDK13)

Target
CDK13
Molecular classification
Enzyme, Protein kinase (serine/threonine), Cyclin-dependent kinase, CRK7 subfamily
01

Overview

Cyclin-dependent kinase 13 (CDK13) is a member of the cyclin-dependent serine/threonine protein kinase family that plays a key role in regulating gene transcription by phosphorylating the C-terminal domain of RNA polymerase II, which is critical for transcription elongation and mRNA splicing. Unlike cell cycle CDKs, CDK13 primarily functions in the control of gene expression and is required for proper RNA processing. CDK13 is ubiquitously expressed across tissues and, when mutated, causes CDK13-related disorder, a rare congenital syndrome featuring developmental delay, congenital heart disease, and dysmorphic features. CDK13 is being studied as a therapeutic target in cancer, where its inhibition (often alongside CDK12) may impair tumor growth by deregulating transcriptional programs important for cell survival. No approved drugs target CDK13 yet, but several small molecules (e.g., THZ531, YJZ5118) are used in preclinical research, mainly as dual CDK12/13 inhibitors. CDK13 and its activity are therefore of clinical interest both for rare genetic diseases and as an anticancer target, but its fundamental role in gene expression raises concerns about safety and selectivity.

Other names
CDC2LCDC2L5CHEDhCDK13cell division cycle 2-like 5CDC2-related protein kinase 5cell division protein kinase 13
02

Mechanism of action

Inhibition of serine/threonine kinase activity Blocking RNA polymerase II phosphorylation and transcriptional elongation

03

Biological functions

Transcription regulationmRNA processing and splicingPhosphorylation of RNA polymerase II (transcription elongation)Cell differentiationCell proliferation
04

Disease associations

Cancer (e.g. prostate cancer, general oncogenesis)Developmental disorders (CDK13-related disorder/CHED, neurodevelopmental delay, congenital heart disease)Cardiovascular disease (via congenital heart disorders when mutated)
05

Safety considerations

Essential for embryonic development; double knockout is embryonic lethal in animalsMutations lead to severe neurodevelopmental and cardiac defectsPotential for transcriptional dysregulation and off-target toxicity if inhibited systemically
06

Interacting drugs

THZ531 (preclinical/research stage selective CDK12/13 inhibitor)

2 more in the full profile.

07

Biomarkers

CDK13 gene mutation (for diagnosis of CDK13-related disorder/CHED)Possibly phosphorylated RNA polymerase II status (for pathway activity, research use)

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