Target intelligence / Profile preview

Cyclin-dependent kinase 2, Cyclin-dependent kinase 7, Cyclin-dependent kinase 9 (CDK2, CDK7, CDK9)

Target
CDK2, CDK7, CDK9
Molecular classification
Enzyme, Serine/threonine protein kinase, Cyclin-dependent kinase family, CMGC kinase group
01

Overview

Cyclin-dependent kinases 2, 7, and 9 are serine/threonine protein kinases that require association with regulatory cyclins for activation. CDK2 primarily regulates the G1/S cell cycle transition and DNA synthesis. CDK7 is a dual-function kinase, serving both as a CDK-activating kinase (CAK), which phosphorylates and activates CDK1, CDK2, CDK4, and CDK6 to regulate cell cycle progression, and as a pivotal regulator of RNA polymerase II-mediated transcription via the TFIIH complex. CDK9 is a central transcriptional CDK that, together with its cyclin partners, catalyzes phosphorylation of RNA polymerase II, thereby regulating transcriptional elongation—an activity exploited by many cancers for rapid gene expression. All three kinases are established therapeutic targets, particularly in oncology, owing to their roles in cell division and gene expression; numerous small-molecule inhibitors are clinically explored or used[1][3][6][5][2][4][7][9].

Other names
p33(CDK2)cyclin-dependent kinase 2CDK-activating kinase catalytic subunit (CAK)MO15PITALREcyclin-dependent kinase 9CDK9~42~CDK9~55~
02

Mechanism of action

Inhibition of CDK2 leads to cell cycle arrest in G1/S transition, blocking DNA synthesis. Inhibition of CDK7 impairs both cell cycle progression and Pol II-dependent transcription initiation. Inhibition of CDK9 halts transcriptional elongation by preventing phosphorylation of the CTD domain of RNA polymerase II, reducing short-lived anti-apoptotic protein expression.

03

Biological functions

Cell cycle regulation (CDK2, CDK7)Transcription (CDK7, CDK9)Cell proliferationDNA replication (CDK2)Regulation of RNA polymerase II phosphorylation (CDK7, CDK9)
04

Disease associations

Cancer (all three, especially in diverse cancer types)Hematological malignancies (notably for CDK9)Other (defects can contribute to neurodegeneration and other proliferative diseases)
05

Safety considerations

Myelosuppression (neutropenia, thrombocytopenia)CardiotoxicityHepatotoxicityGlobal transcriptional inhibition leading to toxicity in normal proliferative tissuesPotential effects on normal tissue regenerationOff-target effects if inhibition is not selective
06

Interacting drugs

Palbociclib (mainly targets CDK4/6 but may cross-react)

7 more in the full profile.

07

Biomarkers

CDK2, CDK7, and CDK9 expression levels (IHC, gene expression assays)Phosphorylation status of retinoblastoma protein (for CDK2)Phosphorylated RNA polymerase II CTD (Ser2/Ser5/Ser7) (for CDK7 and CDK9 activity)MYC amplification or high MYC signature correlates with CDK9 dependence in cancer

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