Target intelligence / Profile preview

DNA (cytosine-5)-methyltransferase 3A (DNMT3A)

Target
DNMT3A
Molecular classification
Enzyme, Methyltransferase, Epigenetic modifier
01

Overview

DNA (cytosine‑5)‑methyltransferase 3A (DNMT3A) is an enzyme responsible for adding new methyl groups to cytosines within CpG dinucleotides—a process known as de novo DNA methylation. This function distinguishes it from maintenance enzymes like DNMT1. By establishing new epigenetic marks during embryogenesis or cell differentiation, it plays a critical role in regulating gene expression patterns essential for development, cellular identity, genomic imprinting, X-chromosome inactivation, heterochromatin formation, and genome stability. Mutations or dysregulation of *DNMT3A* are strongly implicated in several diseases—notably acute myeloid leukemia—and germline mutations cause overgrowth syndromes with intellectual disability. As an epigenetic regulator rather than a classical receptor or signaling protein targetable by small molecules alone,*DNMT3a* remains a key focus both for understanding disease mechanisms involving aberrant epigenetics and as an indirect therapeutic target through broader hypomethylating strategies[1][2][4].

Other names
DNA methyltransferase 3 alphaDNA (cytosine-5)-methyltransferase 3 alphaDNMT3A2DNM3A_HUMANM.HsaIIIADNA cytosine methyltransferase 3A2[2][3]
02

Mechanism of action

Drugs like azacitidine and decitabine act as nucleoside analogs that incorporate into DNA during replication. They trap and inhibit the activity of DNA methyltransferases by forming covalent bonds with them upon attempted catalysis, leading to hypomethylation of genomic DNA.

03

Biological functions

De novo DNA methylation (establishing new methylation patterns)Epigenetic regulation of gene expression (gene silencing, imprinting, X-inactivation)Cellular differentiation and embryonic developmentTranscriptional repression via recruitment of histone deacetylases (HDACs)Genome stability maintenance
04

Disease associations

Cancer (especially acute myeloid leukemia and clonal hematopoiesis)Overgrowth syndromes (e.g., Tatton-Brown-Rahman syndrome, DNMT3A overgrowth syndrome)
05

Safety considerations

Global epigenetic dysregulation leading to impaired differentiation, increased risk for malignancy/secondary cancers due to genome instability or inappropriate gene activation/silencing (from therapeutic targeting or loss-of-function mutations)Off-target effects from hypomethylating agents, including cytopenias and immunosuppression
06

Interacting drugs

azacitidine

1 more in the full profile.

07

Biomarkers

Mutations in *DNMT3A* (particularly at residue R882) for diagnosis/prognosis in acute myeloid leukemia*DNMT3A* mutation status for clonal hematopoiesis risk stratification

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