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DNA-directed RNA polymerase, bacterial (RNAP (often also abbreviated as DdRP for DNA-dependent RNA polymerase in some literature))

Target
RNAP (often also abbreviated as DdRP for DNA-dependent RNA polymerase in some literature)
Molecular classification
Enzyme, Transcription factor, Multisubunit polymerase complex
01

Overview

DNA-directed RNA polymerase, bacterial is a crucial, multisubunit enzyme complex responsible for transcription—the process of synthesizing RNA from a DNA template in bacteria[1][2][3][4][5]. The core enzyme consists of five conserved subunits (β, β′, two α, and ω), with a total molecular mass of around 380–400 kDa. Transcription initiation requires association with a σ (sigma) factor, which allows promoter-specific binding; together, these form the RNAP holoenzyme[1][3][4][5]. RNAP binds to double-stranded DNA, unwinds it, and catalyzes the polymerization of ribonucleotides into messenger RNA and other RNA species in the 5′–3′ direction[2][3][4]. This target is exploited in bacterial infection treatments by antibiotics like rifampicin, which specifically inhibit its function[2][3]. Resistance to these drugs can occur via mutations in target subunits (notably rpoB)[3]. RNAP's central role in gene expression makes it essential for bacterial survival and a key molecule for both research and therapy[1][2][3][5].

Other names
Bacterial RNA polymeraseDNA-dependent RNA polymeraseRNAPDdRP
02

Mechanism of action

Inhibition of initiation of transcription (e.g., rifampicin binds to the β subunit, blocking RNA synthesis at early stages); Interference with RNA chain elongation (other antibiotics can obstruct the nucleotide addition process); Disruption of proper holoenzyme formation (some drugs target interaction with sigma factors and holoenzyme assembly)

03

Biological functions

Transcription of DNA into RNAGene expression regulationCellular response to environmental stimuliInitiation, elongation, and termination of RNA synthesis
04

Disease associations

InfectionOther
05

Safety considerations

Development of antibiotic resistance (notably, rpoB mutations)Selective toxicity required; some inhibitors can affect mitochondrial RNAP in eukaryotes at high dosesPotential for drug-drug interactions with antibiotic useImpact on microbiome due to broad-spectrum activity of RNAP inhibitors
06

Interacting drugs

Rifampicin

2 more in the full profile.

07

Biomarkers

Presence of rifampicin resistance mutations in rpoB (β subunit gene)Expression/activity levels of RNAP (for bacterial load monitoring in infectious diseases)Mutations in rpoB, rpoC (β′ subunit gene) that confer resistance to RNAP-targeting antibiotics

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