Target intelligence / Profile preview

DNA methyltransferase 3 (DNMT3)

Target
DNMT3
Molecular classification
Enzyme, DNA methyltransferase, Epigenetic regulator, Transferase
01

Overview

DNA methyltransferase 3 (DNMT3) is a family of enzymes, primarily comprising DNMT3A and DNMT3B, that are responsible for the de novo establishment of DNA methylation patterns during embryonic development and cellular differentiation (PubMed:12138111, PubMed:16357870). These enzymes catalyze the transfer of a methyl group from S-adenosyl-L-methionine to the C5 position of cytosine residues, typically within CpG dinucleotides, which serves as a critical epigenetic mechanism for gene silencing, genomic imprinting, and the maintenance of chromosomal stability (PubMed:30478443). Dysregulation of DNMT3 activity, through either somatic mutations or overexpression, is a significant driver in various malignancies, most notably acute myeloid leukemia (AML), where DNMT3A mutations are among the most frequent genetic alterations (PubMed:29414941). Additionally, germline mutations in DNMT3 members are linked to developmental disorders such as Tatton-Brown-Rahman syndrome and ICF syndrome (PubMed:27153398). Therapeutic strategies targeting DNMT3 primarily utilize hypomethylating agents like azacitidine and decitabine, which are nucleoside analogs that incorporate into DNA and irreversibly trap the enzymes, leading to their degradation and the subsequent reactivation of silenced tumor suppressor genes.

Other names
De novo DNA methyltransferaseDNMT3 familyDNA (cytosine-5)-methyltransferase 3DNA methyltransferase 3 alpha (DNMT3A)DNA methyltransferase 3 beta (DNMT3B)DNA methyltransferase 3-like (DNMT3L)
02

Mechanism of action

Covalent inhibition via DNA incorporation (nucleoside analogs); non-covalent binding to the catalytic site (non-nucleoside inhibitors); induction of proteasomal degradation of the enzyme.

03

Biological functions

De novo DNA methylationGene silencingGenomic imprintingEmbryonic developmentX-chromosome inactivationHematopoiesis regulationChromatin remodeling
04

Disease associations

Acute myeloid leukemia (AML)Myelodysplastic syndrome (MDS)Tatton-Brown-Rahman syndromeICF syndrome (Immunodeficiency, Centromeric instability and Facial anomalies)Solid tumors (e.g., colorectal cancer, lung cancer)Neurodevelopmental disorders
05

Safety considerations

Myelosuppression (neutropenia, thrombocytopenia)Gastrointestinal toxicityIncreased risk of infectionPotential for secondary malignancies due to genomic instabilityTeratogenicity
06

Interacting drugs

Azacitidine

6 more in the full profile.

07

Biomarkers

DNMT3A R882 mutation statusGlobal DNA methylation levelsPromoter hypermethylation of tumor suppressor genesDNMT3A/B protein expression levels

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