Target intelligence / Profile preview

DNA topoisomerase (combined with DNA intercalation mechanism) (None)

Target
None
Molecular classification
Enzyme (DNA topoisomerase I, DNA topoisomerase II), Other (DNA-intercalating agents are a pharmacological class, not a molecular family)
01

Overview

DNA intercalation/topoisomerase inhibition refers to a pharmacological mechanism where compounds, commonly used in cancer chemotherapy, both insert themselves between base pairs in the DNA helix (intercalation) and inhibit the activity of DNA topoisomerase enzymes, especially type I (Top1) and type II (Top2). Intercalating agents distort the DNA structure, interfering with replication and transcription, while topoisomerase inhibitors block the catalytic cycle of these essential enzymes, stabilizing covalent DNA-enzyme intermediates, ultimately resulting in permanent DNA strand breaks and cell death. Many clinically important anti-cancer drugs—including the anthracyclines (such as doxorubicin), camptothecin derivatives (such as topotecan), and others—act through this dual mechanism. These agents are highly effective but carry significant risks including myelosuppression, cardiotoxicity, and DNA damage-related secondary cancers. In summary, "DNA intercalation/topoisomerase inhibition" is not a specific target but a description of a dual-action mechanism involving enzyme (topoisomerase) inhibition and DNA structural interference. For structured data, these components should be split or mapped to the canonical targets: DNA topoisomerase I or II.

Other names
DNA topoisomerase I (Top1)DNA topoisomerase II (Top2, sometimes Topo IIα or Topo IIβ)Topoisomerase I/IITopoisomerase poisons (as a drug class acting via both intercalation and enzyme inhibition)DNA-intercalating agents
02

Mechanism of action

Intercalation between DNA base pairs, causing DNA distortion and blocking transcription/replication. Stabilization of DNA-topoisomerase covalent complexes, preventing DNA religation and causing DNA strand breaks. Trapping of enzyme-DNA intermediates, referred to as "interfacial inhibition".

03

Biological functions

Regulation of DNA topologyDNA replicationChromosome segregationTranscriptionCell cycle progressionDNA repair
04

Disease associations

Cancer (primary therapeutic context)Other (certain antibacterial agents target bacterial topoisomerases in infection)
05

Safety considerations

Myelosuppression (bone marrow toxicity)Cardiotoxicity (prominent for doxorubicin and some other anthracyclines)Secondary malignancies (risk of treatment-related leukemia due to DNA damage)Drug resistance (due to decreased topoisomerase expression or increased drug efflux)
06

Interacting drugs

Doxorubicin (anthracycline, intercalating Top2 inhibitor)

10 more in the full profile.

07

Biomarkers

Topoisomerase I or II protein expression levels (predictive of response to some drugs)DNA damage markers (e.g., γH2AX), but these are generic for DNA damage induction rather than specific for topoisomerase inhibition

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