Target intelligence / Profile preview

Dual specificity protein kinase CLK3 (CLK3)

Target
CLK3
Molecular classification
Enzyme, Protein kinase, Dual specificity kinase
01

Overview

Dual specificity protein kinase CLK3 (CLK3) is a nuclear enzyme encoded by the *CLK3* gene in humans, classified as a dual specificity kinase because it phosphorylates both serine/threonine and tyrosine residues[6][9]. It belongs to the CDC-like kinase (CLK) family, with a key role in the regulation of serine/arginine-rich (SR) proteins that direct splice site selection in pre-mRNA splicing by reversible phosphorylation[2][3][7][9]. Unique structural features, including specific insertions in its kinase domain, influence substrate recognition and interaction with inhibitors[3][5]. CLK3 is implicated in alternative splicing regulation, neural development, and metabolic reprogramming, and its dysregulation — including overexpression and activating mutations — has been linked to cancer, particularly cholangiocarcinoma[2][4]. The enzyme is present primarily in the nucleus, and multiple alternatively spliced isoforms exist, one of which lacks kinase activity[6][9]. CLK3’s structural and functional uniqueness within the CLK subfamily presents challenges and opportunities for selective therapeutic targeting[2][3][5][7].

Other names
CDC-like kinase 3CDC2-like kinase 3PHCLK3/152
02

Mechanism of action

Inhibition of dual specificity kinase activity (serine/threonine and tyrosine kinase activity)

03

Biological functions

Alternative splicing regulationSignal transductionPhosphorylation of SR proteinsRegulation of purine metabolismNeural development
04

Disease associations

CancerDevelopmental disorders (e.g., possible role in autism spectrum disorder and neural development)Cholangiocarcinoma
05

Safety considerations

Limited information; kinase inhibitors may have off-target effects and inhibitor selectivity between CLK isoforms can be challenging
06

Interacting drugs

CX-4945 (and other kinase inhibitors; isoform-specificity noted for CLK1 over CLK3)
07

Biomarkers

CLK3 overexpression or gain-of-function mutations (e.g., Q607R) in cholangiocarcinomaDown-regulation in testicular tissue in azoospermia (indicative of possible biomarker potential in reproductive disorders)

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