Target intelligence / Profile preview

Euchromatic histone-lysine N-methyltransferase 1 (EHMT1 (often also called GLP/G9a-like protein))

Target
EHMT1 (often also called GLP/G9a-like protein)
Molecular classification
Enzyme, Histone methyltransferase, Epigenetic regulator, Histone modification enzyme, Protein-lysine N-methyltransferase
01

Overview

Euchromatic histone-lysine N-methyltransferase 1 (EHMT1), also known as G9a-like protein (GLP), is an enzyme encoded by the EHMT1 gene. It mono- and dimethylates lysine 9 on histone H3 (H3K9me1 and H3K9me2), marking chromatin for transcriptional repression and recruiting heterochromatin protein complexes. EHMT1 works both as a homodimer and as a heterodimer with EHMT2 (G9a), playing a central role in epigenetic silencing, chromatin structure, genome stability, and proper development—especially neuronal differentiation and maintenance. Germline mutations or deletions in EHMT1 cause Kleefstra syndrome, a disorder characterized by intellectual disability, developmental delay, and autistic traits. EHMT1 also participates in the DNA damage response and is implicated in cancer, where its activity can contribute to resistance to chemotherapy and abnormal gene silencing. Inhibitors of EHMT1/2 are of research interest for reversing epigenetic silencing in cancer and potentially other diseases, but therapeutic targeting requires careful monitoring due to roles in normal tissue maintenance and development.

Other names
GLPG9a-like proteinKMT1DEu-HMTase1FLJ12879KIAA1876bA188C12.1FLJ40292EHMT1-IT1
02

Mechanism of action

Inhibitors block enzymatic methylation of histone H3 lysine 9 (H3K9me1/me2), leading to altered gene expression and increased DNA damage/defective DNA repair in certain cancer models Inhibition can reduce recruitment of repressive chromatin modifiers, disrupt DNA methylation maintenance, and derepress silenced genes

03

Biological functions

Epigenetic transcriptional repression (via histone lysine methylation)Chromatin modificationRegulation of gene expressionDNA methylationGenome stabilityNeuronal development and functionDNA damage repair
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Disease associations

Cancer (multiple types)Intellectual disabilityAutism spectrum disorderNeurodevelopmental disorders (including Kleefstra syndrome, epilepsy, cerebral palsy)Other: inflammatory and cardiovascular diseases
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Safety considerations

Given essential functions in development and neuronal regulation, systemic inhibition may risk neurodevelopmental side effects or cognitive dysfunctionPotential impact on genome stability and cell identity with long-term or potent epigenetic inhibition
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Interacting drugs

UNC0642, UNC0638 (EHMT1/2 inhibitors studied in preclinical models)

1 more in the full profile.

07

Biomarkers

H3K9me1/H3K9me2 abundance (reflects EHMT1/2 activity)γH2AX (DNA damage marker after inhibitor treatment in research)EHMT1 expression level in tumor tissue (for stratification in cancer research)

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