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Gut microbiota–intestinal immune axis

Molecular classification
Other (Microbial community and integrated immune system)
01

Overview

The gut microbiota–intestinal immune axis refers to the interdependent relationship between the diverse microbial community in the gut and the host’s intestinal immune system. Gut microbes are crucial for digestion, vitamin synthesis, metabolic signaling, and training/development of immune responses, with the intestinal barrier acting as a site for immune surveillance and signaling. This axis plays a pivotal role in maintaining homeostasis, mediating inflammation, and protecting against infection. Dysregulation of this axis (dysbiosis or immune imbalance) is implicated in diseases including inflammatory bowel disease, infections, metabolic disorders, cardiovascular disease, some cancers, and autoimmunity. Therapeutic approaches target this axis with interventions such as probiotics, prebiotics, selective antibiotics, and fecal microbiota transplantation to modulate microbiota and immune interactions for health benefit.

Other names
Gut microbiota–immune system axisMicrobiome–immune axisIntestinal microbiome–immunity axis
02

Mechanism of action

Mechanism of action involves the modulation of microbiota composition (e.g., via probiotics, antibiotics, or FMT), enhancement of intestinal barrier function (e.g., by probiotics), modulation of immune signaling pathways (e.g., via microbial metabolites like short-chain fatty acids), and reduction of inflammation (mediated by SCFAs and probiotic effects).

03

Biological functions

Immune responseHomeostasisSignal transduction (via microbial metabolites)Nutrient metabolismBarrier function (intestinal barrier integrity)
04

Disease associations

InflammationInfectionAutoimmune diseaseCardiovascular diseaseCancerMetabolic dysfunction (e.g., diabetes)
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Safety considerations

Dysbiosis risk with antibioticsPotential pathogen transmission (FMT)Immune complications (probiotic sepsis in immunocompromised hosts)
06

Interacting drugs

Probiotics (general class; e.g., Lactobacillus, Bifidobacterium)

4 more in the full profile.

07

Biomarkers

Bacterial diversity indices (e.g., Shannon index)Relative abundance of major taxa (e.g., Firmicutes/Bacteroidetes ratio)Levels of short-chain fatty acids (acetate, propionate, butyrate)Intestinal permeability markers (e.g., zonulin)Immunoglobulin A (IgA) in gut secretions

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