Target intelligence / Profile preview

Gut microbiota composition and metabolites (null)

Target
null
Molecular classification
Other (refers to a microbial community and their metabolic products, not a molecule or molecular family)
01

Overview

Gut microbiota composition and metabolites describe the diverse population of microorganisms residing in the gastrointestinal tract and the wide array of molecules (e.g. short-chain fatty acids, bile acids, phenolic compounds) they produce through dietary fermentation, host compound transformation, and direct biosynthesis. These microbial metabolites have profound effects on host health, affecting metabolic processes, immune regulation, neurobiology, and disease development. Therapeutic strategies increasingly focus on modulating gut microbiota composition or targeting specific microbial metabolites, as growing evidence connects these with insulin resistance, cancer, neurodegenerative diseases, cardiovascular pathologies, and other systemic conditions.

Other names
Intestinal microbiota and metabolitesgut flora metabolitesmicrobial metabolitesgut microbial metabolites
02

Mechanism of action

Modulation of metabolic pathways (e.g. increased production of beneficial SCFAs); Restoration of microbial community balance (reduction of dysbiosis); Inhibition or activation of host receptors, e.g. GPCRs (via microbial metabolites); Alteration of host gene transcription (via HDAC inhibition)

03

Biological functions

Energy metabolism (e.g. conversion of dietary fiber to short-chain fatty acids)Regulation of glucose metabolismImmune responseModulation of circadian rhythmRegulation of host gene expressionSignal transduction (via interaction with host receptors like GPCRs)Regulation of inflammation
04

Disease associations

Metabolic diseases (e.g. type 2 diabetes, obesity, metabolic syndrome)Cancer (e.g. colon cancer via dysbiosis and secondary bile acids)Neurodegenerative diseases (e.g. Alzheimer’s disease via gut-brain axis)Cardiovascular disease (via microbial metabolites like TMAO)Inflammatory diseasesInfection (e.g. *Clostridioides difficile* via bile acid metabolites)
05

Safety considerations

Off-target effects of microbiome modification (potential for dysbiosis, pathogen overgrowth)Unintended metabolic consequences (e.g. increased production of harmful metabolites like secondary bile acids leading to cancer)Transmission of infectious agents (in fecal transplantation)Long-term safety of altering microbial community unknown
06

Interacting drugs

Probiotics (modulate composition and activity)

4 more in the full profile.

07

Biomarkers

Short-chain fatty acids (acetate, propionate, butyrate)Secondary bile acids (deoxycholic acid, lithocholic acid)Trimethylamine N-oxide (TMAO)*p*-cresol sulfate, quinateVarious plasma metabolites per GUTSY AtlasSphingolipids, phosphatidylcholine

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