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Gut microbiota enzymes and metabolic pathways refer to the collective metabolic capabilities encoded by the diverse microorganisms residing in the gastrointestinal tract. These enzymes perform an array of catabolic and biosynthetic transformations, enabling the digestion of complex dietary constituents and the generation of bioactive microbial metabolites—such as short-chain fatty acids, bile acids, vitamins, and polyphenols—that influence host metabolism, immune function, hormone release, and disease susceptibility[1][2][3][4][7]. Unlike mammalian proteins, these microbial enzymes fill gaps in host genome-encoded metabolic capabilities. The overall impact of the gut microbiota’s metabolic activity is systemic, affecting organs beyond the intestine through metabolite circulation[1]. Emerging research highlights the importance of microbiota metabolic pathways in therapeutic development, with growing interest in modulating gut microbial function for disease prevention and treatment, though the diversity and interindividual variability present significant challenges[1][5][6][7].
Modulation of microbial populations or metabolic activity (antibiotics, probiotics, prebiotics) Alteration of the production or transformation of metabolites affecting host physiology (bile acids, SCFAs) Changes in drug bioavailability and pharmacokinetics via microbial metabolism Regulation of local and systemic immune responses through microbial metabolites
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