Target intelligence / Profile preview

Histone deacetylase (HDAC) class I and class II (HDAC class I and II)

Target
HDAC class I and II
Molecular classification
Enzyme, Histone-modifying enzyme, Epigenetic modifier
01

Overview

Histone deacetylase class I and II enzymes are zinc-dependent hydrolases that remove acetyl groups from lysine residues on histones and other proteins, leading to chromatin condensation and transcriptional repression. Class I HDACs (HDAC1, HDAC2, HDAC3, HDAC8) are nuclear and generally exhibit strong deacetylase activity. Class II HDACs (HDAC4, 5, 6, 7, 9, 10) shuttle between nucleus and cytoplasm and often participate in broader signaling processes; class IIa HDACs are typically enzymatically weak unless complexed with other proteins. Both groups help control cell cycle, metabolism, apoptosis, and stress responses, and are frequently dysregulated in diseases, especially cancer, where HDACs promote tumor growth and survival. Pharmacological inhibition of HDACs alters chromatin structure and gene expression, providing the rationale for HDAC inhibitors as anticancer therapies.

Other names
HDACsHistone deacetylase familyClassical HDACs (when referring to class I and II/IV)
02

Mechanism of action

HDAC inhibitors bind to the catalytic site and block deacetylation, causing histone hyperacetylation, chromatin relaxation, and transcriptional activation of silenced genes (often triggering cell cycle arrest, differentiation, and apoptosis in tumor cells).

03

Biological functions

Gene expression regulationChromatin remodelingCell cycle regulationApoptosisCell differentiationMetabolism regulationDNA damage responseTranscriptional control of non-histone proteins
04

Disease associations

CancerNeurodegenerative diseasesInflammationCardiovascular disease
05

Safety considerations

Off-target effects due to broad HDAC inhibitionHematological toxicityCardiac toxicity (QT prolongation)NeurotoxicitySpecificity challenges: disconnect between isoform selectivity and clinical efficacy/safety
06

Interacting drugs

Vorinostat (SAHA)

6 more in the full profile.

07

Biomarkers

HDAC1 expression levelsAcetylation status of histone H3/H4 tailsOther chromatin modification markers in disease settings

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