Target intelligence / Profile preview

Histone deacetylase 6 mRNA (HDAC6 mRNA)

Target
HDAC6 mRNA
Molecular classification
Messenger RNA (mRNA), Histone modification (related to protein product)
01

Overview

Histone deacetylase 6 (HDAC6) mRNA is the messenger RNA transcript that encodes the HDAC6 enzyme, a unique member of the Class IIb histone deacetylase family. Unlike most other HDACs that reside in the nucleus and modify histones, the protein product of HDAC6 mRNA is primarily localized in the cytoplasm, where it regulates the acetylation status of non-histone substrates such as alpha-tubulin, Hsp90, and cortactin (UniProt, Q9UBN7). This mRNA is a critical therapeutic target because its protein product plays a pivotal role in microtubule-dependent transport, the aggresome pathway for protein degradation, and cell motility (NCBI Gene, 10013). Dysregulation of HDAC6 mRNA levels and subsequent protein overexpression are associated with various pathologies, including multiple myeloma, breast cancer, and neurodegenerative disorders like Alzheimer's and Charcot-Marie-Tooth disease (PubMed, PMID: 30214344). Therapeutic strategies targeting the mRNA, such as antisense oligonucleotides (ASOs) and small interfering RNAs (siRNAs), aim to selectively reduce HDAC6 protein levels to restore cellular homeostasis and microtubule stability (PubMed, PMID: 28811345). These RNA-targeted approaches offer a high degree of specificity compared to small molecule inhibitors, potentially minimizing off-target effects associated with the catalytic domains of other HDAC isoforms.

Other names
HDAC6 transcriptHistone deacetylase 6 messenger RNAHDAC6 gene transcript
02

Mechanism of action

Degradation of the mRNA transcript via RNA interference (RNAi) or RNase H-mediated cleavage, leading to reduced translation and depletion of the HDAC6 protein.

03

Biological functions

Protein translation (template for HDAC6 enzyme synthesis)Regulation of microtubule stability (via protein product)Protein degradation and aggresome formation (via protein product)Cell motility and migration (via protein product)Chaperone activity regulation (via protein product)
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Disease associations

Cancer (e.g., Multiple myeloma, Breast cancer, Ovarian cancer)Neurodegenerative disease (e.g., Alzheimer's disease, Parkinson's disease)Peripheral neuropathy (e.g., Charcot-Marie-Tooth disease)Inflammatory diseasesAutoimmune disorders
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Safety considerations

Off-target RNA degradationInnate immune activation by exogenous nucleic acidsDelivery challenges to specific tissues (e.g., crossing the blood-brain barrier)Potential for unintended compensatory upregulation of other HDAC isoforms
06

Interacting drugs

Experimental HDAC6-specific siRNA

1 more in the full profile.

07

Biomarkers

HDAC6 mRNA expression levelsHDAC6 protein expression levelsAcetylated alpha-tubulin levels (downstream marker of HDAC6 activity)Acetylated Hsp90 levels

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