Target intelligence / Profile preview

Histone deacetylase class I and class IIa (HDAC class I/IIa)

Target
HDAC class I/IIa
Molecular classification
Enzyme, Histone modification, Transcriptional regulator
01

Overview

Histone deacetylase class I and class IIa are two subfamilies of histone deacetylase enzymes (HDACs), which remove acetyl groups from lysine residues on histone and non-histone proteins, leading to chromatin condensation and transcriptional repression. Class I HDACs (HDAC1, 2, 3, 8) are mostly nuclear, have robust deacetylase activity, and are key regulators of gene expression and cell proliferation. Class IIa HDACs (HDAC4, 5, 7, 9) shuttle between the nucleus and cytoplasm, act primarily as signal-dependent transcriptional repressors, and have limited intrinsic deacetylase activity due to a key amino acid substitution in their active site, but operate mainly by recruiting class I HDACs and interacting with transcription factors (such as MEF2). Both classes are involved in epigenetic regulation, cellular differentiation, metabolism, and are targets for anticancer and other therapeutics. Important note on naming: "Histone deacetylase class I/IIa" designates two parallel subfamilies, not a singular molecule. For structured data, list individual enzymes (e.g., HDAC1, HDAC2, HDAC4, HDAC5, etc.) as specific targets.

Other names
Class I histone deacetylaseClass IIa histone deacetylaseHDAC (generic for the family, but not for this specific grouping)Sometimes HDAC1/4/5/7/9/3 (for representative members)Histone deacetylase enzymes (family)
02

Mechanism of action

Inhibition of deacetylase enzymatic activity, leading to increased acetylation of histones and non-histone proteins. Transcriptional activation of tumor suppressor genes due to chromatin relaxation. Alteration of protein–protein interactions (e.g., between HDACs and transcription factors/co-repressors).

03

Biological functions

Epigenetic regulationGene expression/repressionCell differentiationCell cycle regulationMetabolic regulationCell proliferationApoptosis
04

Disease associations

CancerCardiovascular diseaseMetabolic diseaseNeurodegenerative diseaseOther (including inflammation and immune disorders)
05

Safety considerations

On-target toxicity due to broad epigenetic effects (hematologic toxicity, GI toxicity, cardiac effects)Off-target effects due to inhibition of multiple HDAC isozymesPotential for developmental toxicity, neurotoxicity, or exacerbation of metabolic diseaseResistance development in cancer therapy
06

Interacting drugs

Vorinostat (SAHA)

6 more in the full profile.

07

Biomarkers

Global histone acetylation levelsHDAC mRNA or protein expression (e.g. HDAC1, HDAC4)Acetylation of non-histone proteins (p53, α-tubulin)Disease tissue HDAC signature (e.g., elevated HDAC7 or HDAC9 in certain cancers)

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