Target intelligence / Profile preview

Histone deacetylase class I and II isozymes (HDAC class I/II)

Target
HDAC class I/II
Molecular classification
Enzyme (UniProt, 2024), Histone modification (NCBI, 2023), Hydrolase (UniProt, 2024)
01

Overview

Histone deacetylases (HDACs) are a group of enzymes that catalyze the removal of acetyl groups from lysine residues on histone tails and various non-histone proteins (UniProt, 2024). Class I (HDAC1, 2, 3, and 8) and Class II (HDAC4, 5, 6, 7, 9, and 10) isozymes are the primary targets of several FDA-approved drugs, playing a pivotal role in the epigenetic regulation of gene expression (NCBI, 2023). By removing these acetyl groups, HDACs promote a condensed, transcriptionally inactive chromatin state known as heterochromatin (PubMed, 2022). In many cancers, these enzymes are overexpressed or recruited to tumor suppressor promoters, leading to aberrant gene silencing and uncontrolled cell proliferation (StatPearls, 2023). Pharmacological inhibition of these isozymes leads to the accumulation of acetylated histones, which relaxes chromatin structure and allows for the re-expression of genes involved in cell cycle arrest, differentiation, and apoptosis (Nature Reviews Drug Discovery, 2020). HDAC inhibitors, such as vorinostat and panobinostat, typically bind to the zinc-containing catalytic site of these enzymes to block their activity (PubChem, 2024). Beyond oncology, Class I and II HDACs are involved in the regulation of inflammatory cytokines and the survival of neurons, making them targets for autoimmune and neurodegenerative research (PubMed, 2021). Therapeutic challenges include managing systemic toxicities like thrombocytopenia and cardiac arrhythmias, which often arise from the broad activity of non-selective inhibitors (FDA, 2023).

Other names
HDACsHistone deacetylasesLysine deacetylasesKDACs
02

Mechanism of action

Inhibition of the enzymatic activity of Class I and II histone deacetylases, resulting in increased acetylation of histone and non-histone proteins, which promotes transcriptional activation of tumor suppressor genes and modulates various cellular pathways (StatPearls, 2023).

03

Biological functions

Gene expression regulation (UniProt, 2024)Chromatin remodeling (NCBI, 2023)Cell cycle regulation (PubMed, 2022)Apoptosis (StatPearls, 2023)Protein deacetylation (UniProt, 2024)
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Disease associations

Cancer (StatPearls, 2023)Inflammation (PubMed, 2021)Neurodegenerative disease (Nature Reviews Drug Discovery, 2020)Cardiovascular disease (NCBI, 2023)
05

Safety considerations

Thrombocytopenia (FDA, 2023)Neutropenia (StatPearls, 2023)Gastrointestinal toxicity (PubMed, 2022)QT interval prolongation (NCBI, 2023)Fatigue (FDA, 2023)
06

Interacting drugs

Vorinostat (FDA, 2006)

5 more in the full profile.

07

Biomarkers

Histone H3 acetylation (PubMed, 2018)Histone H4 acetylation (PubMed, 2018)HR23B protein expression (Nature Medicine, 2010)

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