Target intelligence / Profile preview

Histone deacetylase class I enzyme (HDAC class I)

Target
HDAC class I
Molecular classification
Enzyme, Histone modification enzyme, Epigenetic regulator
01

Overview

Histone deacetylase class I enzymes are a subgroup within the larger family of histone deacetylases. These zinc-dependent enzymes catalyze the removal of acetyl groups from ε-N-acetyl lysine residues on both core histones and numerous non-histone proteins. By removing these acetyl groups from chromatin-associated proteins—primarily on lysine residues—they promote chromatin condensation and transcriptional repression. Class I members include four main human isoforms: HDAC1, HDAC2, HDAC3, and HDAC8. Beyond their canonical role in gene silencing through chromatin remodeling, they also regulate diverse cellular processes by modifying non-histone substrates involved in cell cycle progression, apoptosis regulation, DNA repair mechanisms, signal transduction pathways such as Notch signaling, among others. Dysregulation or overexpression is implicated in cancer development/progression; thus they have become validated therapeutic targets for anticancer drug development. Several small-molecule inhibitors have been developed that selectively inhibit these enzymes' activity—leading to re-expression of silenced genes critical for growth arrest or apoptosis—and some have received regulatory approval for use against hematologic malignancies.

Other names
HDAC class IClass I histone deacetylaseHistone deacetylase 1/2/3/8 (HDAC1, HDAC2, HDAC3, HDAC8 are the main human class I isoforms)
02

Mechanism of action

Drugs targeting this molecule typically act as histone deacetylase inhibitors, blocking the removal of acetyl groups from lysine residues on histones and non-histone proteins. This leads to increased acetylation, relaxed chromatin structure, reactivation of silenced genes (including tumor suppressors), cell cycle arrest, apoptosis induction, and inhibition of cancer cell proliferation.

03

Biological functions

Regulation of gene expressionChromatin remodelingCell cycle controlApoptosis regulationCell proliferation and differentiation
04

Disease associations

Cancer (notably overexpressed or dysregulated in various cancers)Neurodegenerative disease (implicated in disorders such as schizophrenia)Other diseases involving epigenetic dysregulation
05

Safety considerations

Myelosuppression (thrombocytopenia, neutropenia)Cardiac toxicity (QT prolongation with some agents)Gastrointestinal toxicity (nausea, vomiting)Fatigue and infections due to immunosuppression
06

Interacting drugs

Vorinostat (SAHA)

3 more in the full profile.

07

Biomarkers

Expression levels of individual HDAC isoforms (e.g., high tumor expression of HDAC1 or HDAC3)Global histone acetylation status in tumors may be explored as pharmacodynamic markers

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