Target intelligence / Profile preview

Histone H3 lysine 4 trimethylation (H3K4me3)

Target
H3K4me3
Molecular classification
Histone modification, Epigenetic mark
01

Overview

Histone H3 lysine 4 trimethylation (H3K4me3) is a critical epigenetic modification typically localized at the transcription start sites of actively transcribed genes. It acts as a transcriptional scaffold, recruiting 'reader' proteins such as TFIID and various chromatin remodelers to facilitate the assembly of the pre-initiation complex and RNA polymerase II. The modification is dynamically regulated by the SET1/MLL (KMT2) family of methyltransferases, often referred to as 'writers,' and removed by the KDM5 family of demethylases, known as 'erasers.' In many cancers, particularly MLL-rearranged leukemias, the regulation of H3K4me3 is subverted, leading to the sustained expression of oncogenic programs and blocking cellular differentiation. Therapeutic intervention focuses on small molecules that disrupt the MLL complex assembly (e.g., Menin-MLL inhibitors) or inhibit demethylase activity to correct these aberrant epigenetic landscapes. Beyond oncology, H3K4me3 is vital for proper embryonic development and its disruption is linked to various neurodevelopmental and intellectual disability syndromes.

Other names
H3K4me3Trimethyl-histone H3 (Lys4)H3 Lys4 trimethylationH3K4 trimethyl
02

Mechanism of action

Modulation of H3K4me3 levels through the inhibition of 'writer' complexes (e.g., Menin-MLL interaction) to decrease oncogenic transcription, or 'eraser' enzymes (e.g., KDM5 demethylases) to restore tumor suppressor activity.

03

Biological functions

Gene transcription activationChromatin remodelingRNA polymerase II recruitmentPromoter markingEpigenetic signaling
04

Disease associations

CancerLeukemiaNeurodevelopmental disorderKabuki syndromeInflammation
05

Safety considerations

Global epigenetic dysregulationOff-target gene activation/repressionHematological toxicityPotential for secondary malignancies due to altered chromatin states
06

Interacting drugs

Revumenib

4 more in the full profile.

07

Biomarkers

H3K4me3 promoter occupancy (ChIP-seq)Global H3K4me3 levelsMLL1/KMT2A rearrangement statusKDM5A expression levels

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