Target intelligence / Profile preview

Histone lysine demethylase PHF8 (PHF8)

Target
PHF8
Molecular classification
Enzyme, Histone demethylase, Epigenetic regulator, JmjC (Jumonji C)-domain containing protein, Zinc finger protein, Chromatin modifier
01

Overview

Histone lysine demethylase PHF8 (PHF8, also known as KDM7B) is an epigenetic enzyme that catalyzes the Fe(II)- and 2-oxoglutarate-dependent demethylation of mono- and dimethylated lysines on histone H3 (especially H3K9me1/2, H3K27me2, possibly H4K20me1 and H3K36me2), regulating chromatin accessibility and gene expression[2][1][5]. PHF8 contains a plant homeodomain (PHD) involved in substrate recognition and a JmjC catalytic domain for demethylase activity[2][1]. It acts both as a transcriptional coactivator and repressor, influencing cell cycle progression, DNA damage repair, and broader epigenetic regulatory programs. Mutations in PHF8 are causally linked to X-linked intellectual disability syndromes with craniofacial defects, and altered PHF8 function is associated with cancer and other diseases[1][2][5]. As an epigenetic regulator, PHF8 is under preclinical investigation as a drug target for modulators of histone methylation[5].

Other names
KDM7BJHDM1FPlant homeodomain (PHD) finger protein 8KIAA1111ZNF422Zinc finger protein 422[Histone H3]-dimethyl-L-lysine(36) demethylase PHF8[Histone H3]-dimethyl-L-lysine(9) demethylase PHF8Jumonji C domain-containing histone demethylase 1FLysine demethylase 7BMRXSSD
02

Mechanism of action

Small-molecule inhibitors of PHF8 (in experimental/preclinical phases) are designed to block its Fe(II)- and 2-oxoglutarate-dependent dioxygenase activity, thereby inhibiting demethylation of repressive histone marks and altering gene expression. Disruption of PHF8 activity can lead to accumulation of transcriptionally repressive histone methylation and altered cellular epigenetic state.

03

Biological functions

Histone demethylation (especially H3K9me1/2, H3K27me2, H4K20me1, H3K36me2)Transcriptional regulation and coactivationCell cycle regulation (G1-S and G2-M transitions)DNA damage repair (homologous recombination and non-homologous end joining)Chromatin remodelingEpigenetic control of gene expressionRegulation of cell proliferation
04

Disease associations

X-linked intellectual disability (mental retardation)Cleft lip/palate and craniofacial anomaliesCancerNeurological disorders
05

Safety considerations

PHF8 is crucial for normal development, especially neural and craniofacial; inhibition/mutation can cause intellectual disability and developmental defectsTargeting PHF8 systemically could impact chromatin stability and transcription in normal tissues, raising concerns of toxicity or off-target developmental effects
06

Interacting drugs

No specific, clinically used small-molecule inhibitors or drugs directly targeting PHF8 are currently well-characterized in clinical use; however, PHF8 is considered a potential target for epigenetic drugs, and efforts are ongoing to develop JmjC demethylase inhibitors in preclinical research
07

Biomarkers

Methylation status of H3K9me2/me1, H3K27me2, H4K20me1 as direct substratesAltered PHF8 expression or mutations (e.g., F279S) in genetic/developmental disorders

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