Target intelligence / Profile preview

Histone-lysine N-methyltransferase 2A–menin complex (KMT2A–menin)

Target
KMT2A–menin
Molecular classification
Histone modification, Enzyme (for KMT2A), Transcriptional co-regulator complex, Epigenetic regulator
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Overview

The histone-lysine N-methyltransferase 2A–menin complex comprises the enzyme KMT2A (also known as MLL1/MLL) and the scaffold protein menin. KMT2A is a histone methyltransferase that trimethylates lysine 4 of histone H3 (H3K4), a modification associated with active gene transcription. Menin, a product of the MEN1 gene, acts as a critical cofactor that binds the N-terminal region of KMT2A, recruiting it and its associated complex to chromatin at select gene promoters, most notably HOX gene loci. This interaction is essential for normal hemato- and neurodevelopment but is also co-opted in various leukemias—especially those with KMT2A rearrangements (KMT2Ar)—to maintain a leukemogenic transcriptional program centered on aberrant activation of HOX/MEIS1. Disruption of the menin–KMT2A complex with small-molecule inhibitors effectively blocks these transcriptional programs, providing a clinically validated therapeutic strategy in AML and ALL. This target is highly specific to a subset of developmental and leukemic gene expression pathways, making it a promising tool in epigenetic cancer therapy, though resistance and safety remain clinical challenges.

Other names
KMT2A–meninMLL1–meninmenin–KMT2AMLL1–MEN1 complexMLL–menin complex
02

Mechanism of action

Small-molecule inhibition of the menin–KMT2A interaction, blocking formation of the KMT2A–menin epigenetic complex, reducing aberrant HOX/MEIS1 gene transcription that drives leukemogenesis; Disruption of chromatin recruitment and methylation functions; Downregulation of leukemogenic transcriptional programs

03

Biological functions

Regulation of gene transcription (especially HOX gene clusters)Epigenetic regulation via H3K4 methylationHematopoiesisCell proliferationCell self-renewalCell cycle regulationChromatin state maintenance
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Disease associations

Cancer (especially acute myeloid leukemia (AML), acute lymphoblastic leukemia (ALL), KMT2A-rearranged leukemias)Neurodevelopmental syndromesChromatinopathiesOther malignancies
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Safety considerations

Emergence of resistance mutations in MEN1 or KMT2A, leading to therapy resistancePossible on-target effects in non-malignant tissues due to essential developmental and epigenetic roles of KMT2A and meninPotential impact on normal hematopoiesis and neurodevelopment with long-term suppression
06

Interacting drugs

Revumenib

6 more in the full profile.

07

Biomarkers

KMT2A rearrangement (KMT2Ar) in leukemiaNPM1 mutation statusHOX/MEIS1 gene expression patterns

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