Target intelligence / Profile preview

Histone-lysine N-methyltransferase 2C (KMT2C)

Target
KMT2C
Molecular classification
Enzyme, Histone methyltransferase, Chromatin-modifying enzyme, Transcription coactivator, Zinc finger protein
01

Overview

Histone-lysine N-methyltransferase 2C (KMT2C), also known as MLL3, is a large nuclear enzyme belonging to the mixed-lineage leukemia (MLL) family[2][4][5]. It acts as a key component of chromatin-modifying complexes, specifically catalyzing monomethylation of histone H3 lysine 4 (H3K4me1) at enhancer regions[1][3][4][6]. KMT2C regulates chromatin accessibility, transcriptional activation, and cell fate decisions by establishing and maintaining active enhancer signatures through cooperation with other epigenetic modifiers such as CBP/p300 and UTX[3]. Its biological activities are essential for normal development, differentiation, and DNA damage response, with loss-of-function mutations or reduced expression promoting oncogenic transformation and developmental disorders[1][5]. KMT2C is frequently mutated in human cancers, functioning as a tumor suppressor whose deficiency disrupts enhancer-associated gene regulation, leading to abnormalities in cell proliferation, migration, and immune escape mechanisms[1][3]. Pathogenic mutations also cause Kleefstra syndrome-2, a neurodevelopmental disease[2][4][5]. KMT2C is increasingly studied as a prognostic biomarker and a synthetic lethal therapeutic target, with selective vulnerabilities exposed to certain epigenetic drugs in tumors bearing KMT2C alterations[1][5]. Complete loss of KMT2C is embryonic lethal in mice, highlighting its critical role in chromatin biology and gene regulation[1].

Other names
Myeloid/lymphoid or mixed-lineage leukemia protein 3MLL3Lysine N-methyltransferase 2CALR-like proteinHomologous to ALR proteinHALRKIAA1506KLEFS2
02

Mechanism of action

Inhibitors (synthetic lethals targeting epigenetic vulnerabilities; e.g., EZH2 inhibition in the context of KMT2C mutation[1])

03

Biological functions

Histone methylation (H3K4)Enhancer activationTranscriptional coactivationRegulation of gene expressionChromatin remodelingDNA damage responseCell differentiationSignal transduction (Wnt, ErbB pathways)Cell adhesionImmune response modulation
04

Disease associations

Cancer (breast, colon, bladder, hepatocellular carcinoma, AML, myelodysplastic syndrome)Neurodevelopmental disorder (Kleefstra syndrome-2)Tumor immunotherapyEndocrine resistance
05

Safety considerations

Genomic instability from KMT2C inactivationimpact on global chromatin and transcriptional programsrisk of off-target epigenetic effectslethality of complete gene knockout in preclinical models[1]
06

Interacting drugs

EZH2 inhibitors (sensitivity in certain KMT2C mutant tumors[1])
07

Biomarkers

KMT2C mutation status (prognostic biomarker and predictor of tyrosine kinase inhibitor resistance in cancer[1])H3K4me1/H3K27ac levels (functional enhancer marker[7])

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