Target intelligence / Profile preview

Histone-lysine N-methyltransferase KMT5A (SETD8)

Target
SETD8
Molecular classification
Enzyme, Histone methyltransferase, Protein-lysine N-methyltransferase, SET domain-containing methyltransferase, Epigenetic regulator, Histone modification
01

Overview

Histone-lysine N-methyltransferase KMT5A (SETD8) is a SET domain-containing protein-lysine N-methyltransferase that catalyzes monomethylation of histone H4 at lysine 20 (H4K20me1) and also methylates non-histone proteins including p53 and proliferating cell nuclear antigen (PCNA). It is the only known mammalian enzyme responsible for H4K20 monomethylation in vivo, a key epigenetic mark involved in chromatin compaction, DNA replication origin licensing, DNA damage signaling, and recruitment of repair factors such as 53BP1. SETD8 expression and activity are tightly regulated throughout the cell cycle, peaking in G2/M and early G1 and being largely absent in S phase, and its genetic loss causes defects in cell cycle progression, nuclear condensation, and early embryonic lethality. Dysregulation and overexpression of SETD8 are observed in multiple cancers, where it promotes tumorigenesis partly through monomethylation of p53 (suppressing p53-dependent transcription and apoptosis) and monomethylation of PCNA (stabilizing PCNA and enhancing proliferation), making SETD8 an attractive epigenetic cancer drug target for which selective substrate-competitive inhibitors such as UNC0379 have been developed as tool compounds.

Other names
SETD8SET8PR-Set7PR/SET7N-lysine methyltransferase KMT5AProtein-lysine N-methyltransferase KMT5AHistone H4 lysine 20 methyltransferaseH4K20 methyltransferase
02

Mechanism of action

Inhibition of SETD8 catalytic activity, blocking monomethylation of histone H4 Lys20 (H4K20me1); Substrate-competitive inhibition at the H4K20-binding site; SAM/S-adenosyl-L-methionine cofactor-competitive or mixed inhibition in some chemotypes; Reduction of SETD8-dependent methylation of non-histone substrates such as p53 and PCNA, leading to enhanced p53 tumor suppressor activity and reduced PCNA-driven proliferation

03

Biological functions

Histone H4 Lys20 monomethylation (H4K20me1)Regulation of chromatin structureDNA replicationDNA damage response and repairCell cycle progression (G2/M, early G1; S-phase entry)Transcriptional regulation (activation and repression)Regulation of p53 activityRegulation of proliferating cell nuclear antigen (PCNA)Regulation of origin of DNA replication (pre-replication complex assembly)Regulation of heterochromatinErythroid cell maturationAdipogenesisMaintenance of adult skin homeostasisNeurodevelopmental regulation
04

Disease associations

CancerNeurodevelopmental disordersOther (general genomic instability syndromes, impaired erythropoiesis, skin homeostasis defects)
05

Safety considerations

Potential genomic instability from excessive loss of H4K20me1Possible impairment of DNA replication and repairRisk of effects on normal proliferating tissues (hematopoietic cells, skin, neurodevelopment) given essential roles in cell cycle and developmentEmbryonic lethality of complete Setd8 loss in animal models suggests a narrow therapeutic window
06

Interacting drugs

UNC0379

1 more in the full profile.

07

Biomarkers

SETD8 (KMT5A) expression level in tumor tissueH4K20me1 levelPCNAK248 monomethylationp53K382 monomethylationmicroRNAs regulating SETD8 (e.g., miR-127-3p, miR-7) as modulators of SETD8 activity in cancer

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