Target intelligence / Profile preview

Histone-lysine N-methyltransferase PRDM16 (PRDM16)

Target
PRDM16
Molecular classification
Enzyme, Histone modification (methyltransferase), Transcription factor, Epigenetic regulator
01

Overview

Histone-lysine N-methyltransferase PRDM16 (PRDM16) is an epigenetic and transcriptional regulator that belongs to the PRDM family and contains a PR (PRDI-BF1 and RIZ1 homology) domain with intrinsic histone methyltransferase activity, specifically catalyzing mono- and di-methylation of lysine 4 on histone H3 (H3K4)[1][2]. It is a master regulator of cell fate and differentiation, crucial for development of brown/beige adipose tissue, maintenance of hematopoietic and neural stem cells, and suppression of MLL-rearranged leukemia through repression of the HOXA gene cluster via activation of GFI1b[1][2][3]. PRDM16 acts as both transcriptional coactivator and corepressor, interacting with various transcription factors and chromatin modification complexes, influencing multiple developmental, metabolic, and disease processes across tissues[1][2][3]. Its dysregulation is implicated in cancer (notably as a tumor suppressor in acute myeloid leukemia), cardiovascular disease, metabolic syndrome, and disorders of stem cell maintenance.

Other names
PR/SET domain 16KIAA1675MEL1PFM13MDS1/EVI1-like gene 1MGC166915KMT8FPR domain zinc finger protein 16PR domain-containing protein 16Transcription factor MEL1CMD1LLLVNC8
02

Mechanism of action

Epigenetic regulation via H3K4 methylation, altering chromatin structure and gene expression. Coactivation with transcription factors (e.g., PPAR-γ, PGC-1α, MED1) and repression through other protein interactions.

03

Biological functions

Histone methylation (H3K4-specific)Transcriptional co-activation and repressionAdipocyte (brown/beige) lineage specificationMaintenance of hematopoietic and neural stem cellsRegulation of cell differentiation, metabolism, and development
04

Disease associations

Cancer (tumor suppressor in mixed lineage leukemia, MLL)Cardiovascular disease (vascular smooth muscle function, susceptibility to vascular disorders)Obesity/metabolic disease (adipose tissue differentiation)Neural and hematopoietic stem cell disorders
05

Safety considerations

Broad epigenetic effects imply risk of stem cell dysregulation, abnormal differentiation, and impact on multiple tissue types if targeted therapeuticallyPotential oncogenic risk with inappropriate activation or silencing, depending on tissue context
06

Biomarkers

PRDM16 expression often used as a biomarker for brown/beige adipose tissue identity, HSC/NSC status, and sometimes loss-of-function in leukemiaHypermethylation or silencing of PRDM16 correlates with MLL leukemia progression

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