Target intelligence / Profile preview

Histone-lysine N-methyltransferase SETD1B (SETD1B)

Target
SETD1B
Molecular classification
Enzyme, Histone methyltransferase, Chromatin modifier, Epigenetic regulator
01

Overview

Histone-lysine N-methyltransferase SETD1B (SETD1B) is an epigenetic enzyme belonging to the class V-like SAM-binding methyltransferase superfamily and forms part of the COMPASS complex that catalyzes mono-, di-, and trimethylation of histone H3 at lysine 4 (H3K4). These methylation marks are associated with active chromatin states and transcriptional regulation. SETD1B is essential for proper gene expression during neurodevelopment and in postnatal neurons, notably regulating genes required for synaptic plasticity, memory, and learning. It also plays a role in controlling gene expression in hematopoietic progenitor cells and is critical for oocyte maturation and fertility. Pathogenic variants cause a spectrum of autosomal dominant neurodevelopmental disorders (often with intellectual disability, seizures, and language delay), and impairments in oogenesis leading to female infertility. The widespread involvement of SETD1B in crucial gene regulation programs means that while it is a potential therapeutic target, it may present significant safety and specificity challenges.

Other names
KIAA1076KMT2GSET1BhSET1BLysine N-methyltransferase 2GSET domain-containing protein 1BSet1BIDDSELD
02

Mechanism of action

Drugs (if developed) would likely act as inhibitors or modulators of the methyltransferase catalytic site, altering H3K4 methylation and hence gene expression programs

03

Biological functions

Catalysis of histone H3 lysine 4 (H3K4) mono-, di-, and trimethylationRegulation of gene expression through chromatin state modulationControl of transcriptional programming in hematopoietic progenitor cells and lymphoid lineage specificationRegulation of postnatal neuronal gene expression, synaptic plasticity, memory, and learningMaternal effect gene, especially in oocyte gene expression and development
04

Disease associations

Neurodevelopmental disorders (including intellectual disability and seizures)Autism spectrum disorder featuresFemale infertility (maternal effect gene, oogenesis defect)Cancer (altered methylation and gene expression implicated in oncogenesis in several studies, though not in supplied results)Other: Anxiety, speech and language delay, pigmentary skin changes
05

Safety considerations

Targeting foundational epigenetic regulators risks broad and unpredictable effects on gene expressionPotential for neurodevelopmental or hematopoietic toxicityRisk of impairing learning, memory, fertility, and developmental gene programs
06

Biomarkers

Mutations in SETD1B gene for neurodevelopmental disorder diagnosisMethylation marks (H3K4me1, H3K4me2, H3K4me3) at gene promoters as epigenetic readouts

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