Target intelligence / Profile preview

Host gut microbiome and mucosal immune system (Gut-Immune Axis)

Target
Gut-Immune Axis
Molecular classification
Other, Biological System, Microbiome-Immune Axis
01

Overview

The host gut microbiome and mucosal immune system constitute a dynamic and reciprocal interface essential for human health. The gut microbiota, consisting of trillions of bacteria, fungi, and viruses, provides critical signals that shape the development and function of the mucosal immune system, which in turn regulates the composition of the microbiota to prevent overgrowth of pathobionts (Belkaid & Hand, 2014). This interaction is primarily mediated through microbial-associated molecular patterns (MAMPs) and metabolites such as short-chain fatty acids (SCFAs), which promote the differentiation of regulatory T-cells (Tregs) and maintain the integrity of the intestinal epithelial barrier (Round & Mazmanian, 2009). Disruptions in this delicate balance, known as dysbiosis, are strongly linked to the pathogenesis of inflammatory bowel diseases, metabolic disorders, and systemic autoimmunity (Wu & Wu, 2012). Therapeutic strategies targeting this axis include the use of probiotics, prebiotics, and fecal microbiota transplantation (FMT) to restore microbial diversity and suppress aberrant immune responses (Thursby & Juge, 2017). Because this "target" represents a complex biological system rather than a single molecule, therapeutic outcomes often depend on the multi-component interactions between microbial communities and host immune cells (Hooper et al., 2012).

Other names
Microbiota-immune axisIntestinal microbiome-mucosal immune interfaceGut-associated lymphoid tissue (GALT)-microbiome systemHost-microbe mucosal interface
02

Mechanism of action

Modulation of the gut-immune axis occurs through the introduction of beneficial microbes (probiotics), substrate for microbial growth (prebiotics), or entire microbial communities (FMT) to restore diversity and produce metabolites like short-chain fatty acids (SCFAs). These metabolites bind to G protein-coupled receptors (e.g., GPR43) on immune cells to induce regulatory T-cell (Treg) differentiation and suppress pro-inflammatory cytokines, thereby restoring mucosal tolerance and barrier integrity.

03

Biological functions

Immune homeostasisMetabolic regulationPathogen defenseIntestinal barrier maintenanceT-cell differentiationInduction of secretory IgATolerance induction
04

Disease associations

Inflammatory bowel disease (IBD)Irritable bowel syndrome (IBS)Colorectal cancerMetabolic syndromeAutoimmune diseaseAllergyCeliac disease
05

Safety considerations

Risk of systemic infection or bacteremia in immunocompromised patientsTransfer of antibiotic resistance genes between microbial speciesUnintended translocation of pathobionts across the epithelial barrierPotential for triggering or exacerbating autoimmune responsesVariability in patient response due to baseline microbiome composition
06

Interacting drugs

Rifaximin

7 more in the full profile.

07

Biomarkers

Microbial alpha diversity (Shannon index)Short-chain fatty acid (SCFA) concentrationFecal calprotectinSecretory IgA (sIgA) levelsFirmicutes/Bacteroidetes ratioFecal zonulin

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