Target intelligence / Profile preview

L3MBTL histone methyl-lysine binding protein 3 (L3MBTL3)

Target
L3MBTL3
Molecular classification
Chromatin-interacting protein, Histone methyl-lysine reader, Transcriptional repressor, Polycomb group (PcG) related protein, Contains MBT (malignant brain tumor) domains, Contains SAM (sterile alpha motif) domain
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Overview

L3MBTL3 (L3MBTL histone methyl-lysine binding protein 3) is a chromatin-interacting protein and member of the malignant brain tumor (MBT) family, characterized by the presence of MBT and SAM domains. It functions as a histone methyl-lysine reader, recognizing mono- and dimethylated lysine residues on histone tails through its MBT domains, and binds methylated lysines on both histone and non-histone proteins. L3MBTL3 plays a role in the repression of gene expression by compacting chromatin, recruiting demethylases (e.g., KDM1A), and mediating ubiquitin-dependent degradation of methylated proteins, acting as an adaptor for ubiquitin ligase complexes. It is essential in embryonic development, especially hematopoiesis, and has been linked to developmental disorders and cancers, with deletion or mutation observed in medulloblastoma. Selective small molecule inhibitors like UNC1215 provide research tools to dissect L3MBTL3 function and mechanisms of histone methylation readout.

Other names
Lethal(3)malignant brain tumor-like protein 3KIAA1798MBT1H-l(3)mbt-like protein 3L(3)mbt-like protein 3MBT-1histone methyl-lysine binding proteinl(3)mbt-like 3
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Mechanism of action

Small molecule inhibitors (e.g., UNC1215) occupy the methyl-lysine binding pocket, preventing L3MBTL3 from binding to histone tails and altering chromatin-related functions

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Biological functions

Recognition of mono- and dimethylated lysine on histone tailsChromatin compaction and modificationTranscriptional repression of target genesRegulation of hematopoiesisInvolvement in ubiquitin-dependent degradation of methylated proteins (e.g., SOX2, DNMT1, E2F1)
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Disease associations

Cancer (notably medulloblastoma)Developmental and hematopoietic disordersThyroid hormone resistance (selective pituitary)Other conditions linked to gene deletion or mutation
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Safety considerations

Potential risks related to impaired chromatin regulation and hematopoietic dysfunctionPossible off-target effects on gene expression and cellular differentiation
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Interacting drugs

UNC1215 (chemical probe/inhibitor)

1 more in the full profile.

07

Biomarkers

Loss of L3MBTL3 expression (potential biomarker in medulloblastoma and certain hematopoietic phenotypes)

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