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Lysosomal and endosomal acidic compartments

Molecular classification
Other
01

Overview

Lysosomal and endosomal acidic compartments represent a critical organelle system responsible for the degradation and recycling of cellular materials through the endocytic and autophagic pathways [1]. These compartments maintain a highly acidic internal environment (pH 4.5–6.5) via the activity of vacuolar H+-ATPase (V-ATPase) proton pumps, which is essential for the optimal function of resident acid hydrolases like cathepsins [2]. In oncology, cancer cells often exploit lysosomal biogenesis and acidified compartments to promote nutrient scavenging and resist apoptosis, making them a target for lysosomal membrane permeabilization (LMP) strategies [3]. Furthermore, many viruses, including influenza and coronaviruses, utilize the low pH of endosomes to trigger conformational changes in viral proteins required for membrane fusion and cytosolic entry [4]. Pharmacological intervention typically involves lysosomotropic weak bases, such as chloroquine, which sequester in these compartments, neutralize their acidity, and disrupt pH-dependent maturation and signaling [5]. However, therapeutic use is often limited by systemic safety concerns, including retinal toxicity and cardiac conduction disturbances, necessitating careful monitoring [6]. Sources: [1] Maxfield, F. R., & McGraw, T. E. (2004). Nature Reviews Molecular Cell Biology; [2] Mindell, J. A. (2012). Annual Review of Physiology; [3] Kirkegaard, T., & Jäättelä, M. (2009). Nature Reviews Cancer; [4] Wang, X., et al. (2020). Cell Research; [5] de Duve, C., et al. (1974). Biochemical Pharmacology; [6] Marmor, M. F., et al. (2016). Ophthalmology.

Other names
Acidic organellesEndolysosomal systemLysosomal compartmentEndosomal compartment
02

Mechanism of action

Lysosomotropism leading to pH neutralization, inhibition of acid-dependent hydrolases, and disruption of viral membrane fusion.

03

Biological functions

Protein degradationAutophagyEndocytosisAntigen presentationNutrient sensingpH regulationOther
04

Disease associations

InfectionCancerNeurodegenerative diseaseLysosomal storage diseaseMalariaOther
05

Safety considerations

Retinopathy (retinal toxicity)QT prolongation (cardiac toxicity)Lysosomal dysfunction phenotypesNeuromyopathyOff-target effects on other acidic organelles (e.g., Golgi apparatus)
06

Interacting drugs

Chloroquine

5 more in the full profile.

07

Biomarkers

Lysosomal pH (measured via pH-sensitive probes like LysoTracker)Cathepsin B activity levelsLC3-II protein levels (autophagy marker)Lysosomal membrane integrity (Galectin-3 puncta formation)

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