Target intelligence / Profile preview

Patient-specific somatic mutations in circulating tumor DNA (ctDNA)

Target
ctDNA
Molecular classification
Nucleic acid, Deoxyribonucleic acid
01

Overview

Patient-specific somatic mutations in circulating tumor DNA (ctDNA) refer to the genetic alterations identified in cell-free DNA fragments shed by tumor cells into the systemic circulation [1]. These mutations function as a liquid biopsy, providing a non-invasive means to profile the genomic landscape of a patient's malignancy and monitor its evolution over time [2]. While ctDNA itself is not a therapeutic target—as drugs do not interact with these circulating DNA fragments to treat disease—it is a vital diagnostic tool for identifying actionable mutations in proteins like EGFR, KRAS, or BRAF [3]. Clinically, the detection of these mutations is used for early cancer detection, monitoring treatment response, and identifying minimal residual disease (MRD) after surgical intervention [4]. The use of ctDNA allows clinicians to track the emergence of resistance mutations, such as the EGFR T790M mutation, often before they are detectable via traditional imaging [5]. However, challenges remain, including the low concentration of ctDNA in early-stage disease and the potential for false positives arising from clonal hematopoiesis of indeterminate potential (CHIP) [6]. Sources: [1] NCI Dictionary of Cancer Terms; [2] Heitzer et al., Nature Reviews Genetics (2019); [3] Corcoran and Chabner, NEJM (2018); [4] Abbosh et al., Nature (2017); [5] Diehl et al., Nature Medicine (2008); [6] Razavi et al., Nature Medicine (2019).

Other names
Circulating tumor DNALiquid biopsyCell-free tumor DNATumor-derived cell-free DNAPlasma somatic mutations
02

Mechanism of action

Not applicable. Patient-specific somatic mutations in ctDNA serve as diagnostic and prognostic biomarkers rather than therapeutic targets for drug binding.

03

Biological functions

Genomic information carrierMarker of apoptosis and necrosisIndicator of tumor burdenReflector of clonal evolution
04

Disease associations

CancerMalignant neoplasmMinimal residual disease
05

Safety considerations

False positives due to clonal hematopoiesis of indeterminate potential (CHIP) [6]Low sensitivity in early-stage or low-shedding tumors [4]Biological noise from non-tumor cell-free DNARisk of misinterpretation leading to inappropriate treatment changes
06

Biomarkers

Variant allele frequency (VAF)Minimal residual disease (MRD)Tumor mutational burden (TMB)Resistance mutations (e.g., EGFR T790M)Clonal evolution tracking

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